Gene detail

Detailed information of CsqKR_Scaf157_6.25 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf157_6.25	CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER	chr1	48324285	48342586	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf157_6.25

TCGTAATTCAAGAAACAAAATATGTACATAAATTTTGCTTTCTTGTAAGGTTGATATTTTATGGGTATAAATAAATAAATAATGTAAACTAATAGGTAGTATTAAAATAAAAAGGAAATAAATATTTATACATATTTGGATACTTTTCCTGCGTTATGGAGGGAAACGACAAGTTTTATACTGGTGGCTGAAATCAGTCTGCCACCCTGGGGTGTGGGAAGTCCAAGGTAGACTCGCCAGTCCACTTTAGTGCTAGCAGTGGAGCCAGTTCAGGTAAAATGGCGGGTCAGAATTTACAGCCCCCTGCCACCAGCAGCTCCACCCAGCAGATTTCTCTCTCCCTCACAGCAGAAAGGGCAAAGGTCGTTCTGACGCCGGGTCATTCTCTGATGGACTGGATCCGGCTGGGTCGCAGTGGGAAAGACCTGACAGGGGTGGGGGGGCAGTTTCTGGAGGTCACCGAAGAGGAGTTGAAGAAACATAACAAACATGATGACGCCTGGATTGCAATTAGAGGAAAGGTGTACAACATCACACCCTACTTAGACTTTCATCCTGGAGGAGTCGACGAACTGATGAGAGGAGCCGGCATCGATGGTACTGTTCTCTTTGATGAGATACACAAATGGGTCAATGCAGAGACAATGCTTGAGAAGTGTGTGATTGGTAAACTGAAGCCTAAAGAAATACAAAGCAAAGGTAGTATTACTTCTCGTACCAGCAACAGATCTAATGTGAAATTTAAACTTGCTCCACCTCCGCAGTTTGTTGAGAAACCAAAGTACGAGTGGTTTCAGAACTCTAAGTGTGTCACTGTGGTTGTGTACACGATGGTGAAAGGTTTACACTCTGACGTGGTGGTCATTGACAGAACCGGCCACAACATCCGCATCACCATCTTCATAGAGTCCCACACCTACACCATGCATATAGAATTAGACCAGCTGATCACTTCAGACTACAATGTGAGAGTGGACAAGGAGTATGGCAAAGTGGAAATTGTGCTGCCAAAAGACGTGGCTGAAGTTGAGTGGACGTCACTGGGCAAAGAACTGGAAGAGCACAACACATTTGTGAAAACAACAGACAGAGCTAGAATGTTCCGTCCGTGTAAGATACTGTCTGTGGAGAACGTAACACACGACACAAAACTCTTCTGTGTCGCTTTGCCCAACACGACACGCATGTGTGTTCCTCTGGGTTACCACGTCCACGTCAAACACTGCATCTCAGAAACAGACATTGACCGATGCTACACAGCCGTGTTGCCGTCACTGCGTCACGCTGCTCAAGATGACAGAGTGTCACACGGCGCAGTTGTCTACCTCATGATCAAAATCTACGACAATGGCGCTCTCTCCTCCTGGCTGGGAACTCTAAACTCAGGCATGTTTATAATTACCTGTGATGAGGTCAGTGTCAGTGATTTTGAGGGCAGTTTTGAGAGGTCAGCTCTGGACAGGTGCACACATCTTGTGCTGTGTGCTGCAGGTTCTGGGTTCACGCCCATGGTCCGACTCATGTACGAGAGTCTGGTAGCAGATGAATCTTGTAAAAGACACGTGACACTGCTGTTTTTCGTTAGAAAGAAAAAAGATATTTACTGGAAGGATCAACTAGATGAACTGGCAGCCAAAAATGACAGGTTTTGTGTGAAGTACATCCTGTCAGAGCCTGATGAGGACTGGACCGGTCCCACAGGACGTGTTCAGAAAGACTCACTTACAGGACCACATCCCCAACGTGGAGGACGGCATTCATCCCCTTCTGTGTACGTGCGGCCCCATCATGTTCACCAAAGAAGTTCTCAGGTTGGCAAAGGAGCTGGGCTGCAAAGATGAACATATACATGCATTTGAAGGTTAGCACAATCAACATGCACAAGGTTTTTTTGTTTTGTTTTTTTCAGAATCTTACATAAAATTCATCCTGTTAGTTTTAATTGCAGTCTTGTACATAGACAGAGATGTTGTATAGTCTTTCTACAACTGAGATGATGGCTGTAATTATGTATCATTTATATTGTAATGATGAATTTTGTATACAATAGCCGAGATATAGTTTTGTATACTGTAATGATGAATTTTGTATACAGTAGTTGAGATATATTGTAGTGAGTTTTGTATATTATAGGTAAGAAATATTATGATAAGTTTTGTATATAACAGTTGAGAAATTTTATAATGATCAGTTTTGTATACAACAGAGGAGAAATATTGTAACAATACGTTTATGTACAATAGTTGTAATGGTGAGTTTTGTATACAATAGATATAGTGATCATAGTTTTGTATACAATTAAATCAAATGAGACATATGATAAAGTTTTTATCTGATTTATTATATTTCTTTCTGTTTTTATTTATTTATTTTATTTATTTATTTATTTTTATACTGTTTCTATCCAGCTGTAATAAATAATGTTACAGAGTTTTTTGTAGGTGAGATTATCACTTTATTCAACCTGCTTCTGGTTGGTATCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF00175	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00970	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR001433	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR007052	Domain	CS domain	Interproscan
IPR008333	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR017927	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR017938	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR018506	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR036400	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR039261	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR051872	Family	Cytochrome b5/Flavoprotein Reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46237	CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004128	Molecular Function	cytochrome-b5 reductase activity, acting on NAD(P)H	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf157_6.25 global RNA-seq network