Gene detail

Detailed information of CsqKR_Scaf151_6.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf151_6.24	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	chr1	893366	901896	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf151_6.24

CAATAGTCGGGAGTCTTTTTTAACCTTCATTTGACAAATAATCATTTTAAGGCAGCTTGAACTGTATCTATATACTGAAATATCAGTAGTTTTAAGTAAAAACTGTATTTTTGTTTAGGTTGAGATTAGCTTGAAAGGAGGGATAGGGATATCAGTGGTGAACTCAGTACCAGAAGAACTTCTCTACATTACCCTCGGATCCATAGCCATGACTTTCTGTACTGAGGCTGATGTCATTTCTGTTGATGGACATGTTGGACTTCTTCAAATTGATAATCAGATGTTTGGTGCACAGCGAGGAGTTCTGTTGTTTGTCACACCACAGACACGCAGCGACGTTGCTGACAACACCCCCGCGCTTCACATCACAGCTCAGAAAGTTTGCAGTGCAAAGTGGAATGCAGAAATATTCAAGCACTTGGTTGTGACAACAAAGAAGATGACGGTTCACTTGGAGGAGAAACTGCTATGGAAACTAATGCAGTTCACAGGATACAACAAACCTGAGGATGACATGAAGAAAATGGAAGAGAGCTGTGACACCCACAGAGCTTTATCAGCATCCTCGGTTTTGGCAAAGCGCTACTACTTTGGTACTCTGAAACTAAACACAAACAGGATAACTCTGAGCATGGTAACTGCCAGCAAGCTTCCTCCTGACCTCAAAGCTATCAAGCATGCCCAGTCCATGACCCTGATTGCCTTTGAAGATGCAAAAGTAGATTTAGATCCATTTGTGCGTCTTCACCCTTTTGAATCAAGTGCCTTCCTTCTGAATGAGATTATGATTCATTACACTCAGGAACTCAAAAGTCAGGCAGCTAAAATCCTTGGTTCTGTGGACTTCCTTGGAAACCCTCTTGGTCTTTTCAACGATGTCACAGAAGGAATCTCTGGCCTCATTAAAGATGGAAATGTGGGTGGACTTCTGAAAAATGTTGCCCATGGTGTTTCTAATTCTGCAGCAAAGGTAGCAAGTTCTATATCTGATGGGGCAGGTACAATCTCCATGGATGACCAGTACAATCAGAAACGTGAACTGCTAAGACAACAGGGTGGTAACACATCTGGTCATCTTGTGGCAGGTGTCAAGGGTCTGGGATATGGAATATTTGGTGGACTTACAGGTGTTTTTACACAACCCCTCGAAGGAGCCAGAGAAGAAGGTGTAGAAGGATTTTTTAAAGGAGTTGGTAAGGGAGTTATTGGAACTGTGACGAAACCTGTGTCAGGAGTGTTTGATTTGACGTCTGCTCTGGCAAATGCTGTCCGAGATTCCAGTCGCAGCTCATCAAGACAGAACCCACCTCGAATCCGTCCTCAGAGATGTTGCTATGGTCCTGGAGGGTTGCTCCCCCCATACTCAAAATCACAGGCAGAGGCTCAGCAGCTGCTGTTCTCAATCAACAACAATGATTACAGTGAATGTGTAATTGCCAAGGACCAGCTGCGCTGGGGCAGTGCAGGAGAAAAGAAAAATCTCTGCATGCATGCTCTGATCACATCAAAACAGGTTTACTTCCTAGGCAGTCAAGACAACGACATTGTACTCAACATTCTCTATGAAGATCTTGTGTGCTGTCGTTCATTCAAAGATGTCAGAGAATCCAGTGTAGGATTAGCCCAGGAGACAATCTACTACATTGAGTTGACAACAAAAGCAGATGGAGCATCTACTCTAGACAGCCTGAAACATCCCAGAGTCAGATGTGAGAAGGCAGCCATTGCCCAGAAGGTTGTTCAAGAGATAAATTATGCGAAAAACATGTATGATGAGAAAATCCAGACCCTTCAACCATTACTGACAACAGATGAGCTTGATATGTAATACAATGTATACCACATAACACACAGGCATTTTTAGTTGTGTTATTAGACATTTTTTTTTTTTTAAAACAGTGGACAAAGAACATATGCTTGGTTCTGATGCTGAATATTCAAAGATGATTTTATTTGTTAAGAAACTTTATTAATGACATTTTGGATAATGTAGTTTTTATAATGGTGCTGAATTTATACTTCATATTGGAGTACAAAAATGAAGTCAAGTTTTGGTTGAATGTATTTTTGCTCTGTGACAAGATGCTTAACTGAAAATGTTTGAAATATGAAATGGATTGGATTCTAGACGACAGATACAACATATTCAGACATTTTATTTACTAGATATATTTAATTATTTATGATAACAAACACAAGTTTCAGTGTGTCAGTTTATTTACACCATGACCACATGTGACAAACATTTAAAAAAAAAATACATGACATTTATACCAGGTATGGCTTGAAAGCCATAAAAAATACAATTTTTAAAAGAAAAAGTAATGAAAGAAAACTGACTCGCTGTCTTGGTAGTTACAGTTTTAATCTTAGATATTTTTATTTTATTTTTTATAAGCAATGCTATTTTTTATATTGTGTGTTTATTTTGGCCTTCTGTTTCTAATAACAAATTATCAGTATGTGATTAAGAGATAAAACTTTAAATTAAAAATAAATATTTTCTGCTCTATAAAAGAATCAAATCAGATTCATGCCATAAGATGAAAAGAAGCAGCAAACAGGGTTGAGATTGTATATAATATAATATAACTGATTTAAAAGTATAAAACAGTGAAGTTAATTTTTGATTTTTATTTAGAACCTGGTAACATCACAAAAATGCTGATGTTTATATTAAAAATAAATGCTTTAAATATTTTATGTTTAATAAACCTTTTAAAATATTTATATATAACGCAAACAGGGAACTAGCTGTATGTAGTTGTTATATAACATCAAAATAAATATTTGTTTTGTGTTTAGTAACAGATCTCAAAAACACCATACCTTTACATTTAAAAAAAAAAAAAAAACATTTTAGTACTGTATATTGAACTTTTAACTATTATTTTTTTCATATATAATTTTCAGTATCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026847	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053	Biological Process	protein retention in Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf151_6.24 global RNA-seq network