Gene detail

Detailed information of CsqKR_Scaf147_6.8 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf147_6.8	GRB2-ASSOCIATED-BINDING PROTEIN	chr6	34586176	34591660	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf147_6.8

ATGTGTGCATGTTTATTGTTACTGTTGTTCTTATTATTACAGAAATGGAAGCGACGTTTCTTCGTGCTCTTCAAGCCATCTGGCAGCCTTCCTGGCCAGTATGAGTTGAATTACTACAATGATGAGGTGTGTACAAAGAAGAAAGGCACGATAGACTTGGAACAATGTGAGCAGATCATCGAATCTCTCGACTCGGAGCAGTTTCCCTATCTTCTCGCTATCAAGACAGTGTGTCGAGGCAAGGACAGAACCTACTTCCTGTCAGCTGATTCCGAAGAAGAAATGACATCATGGGTCAGAAATCTCTGTAGTGTGTGTGAACTGAAACAAGAAGATAATCCAACAGACATACCAGAACCAAAGAAAAACCACCCAGTCACTGATTCGTCTGTGACTGGATTACGTAATGACACTCCCAATGGAAACCTGCAGACTTCAACAACACCTCATCACGTCACCACCACGCAGCCAGGGTCATCCAGCAGATCACAGTCTAAACGAGCTCTTCATTCTCCAACATCGCCAAGCAACCCACCATCATCACCATCATACATCCCTGTGTGGGAGTCCAATTCTGGCTCGCAGAAGAAGAAACAGCCCCCTTCGTTTGAGCGGAGTGTCAGTGTTGACAGCGTACCAGAAGAAATGGCACCTCCACCTCCTGTTAAAACAGGACACATGAAGCATGACAGCAACGACAATGACGTTGGTAACGACAGTGTGTTTAGCTACGACTTCCCTCCACCTAAAAAGAATACTGTTGCCCCTGATTTGAATAAAGTTCCTCCTTCTAGAACAATTGATTTCACTGACAGCAAAGATCAGTGTTACGATGTTCCTCCGCACAGTGATGGTCCTGCCAGACCTCCCCATGTCCCGCTCTCTTCCACATCTCTTGCTTATGACACACCACCACCTCGACATAAACATGACATTCAACAACCTTACGACATCGCTCCTCACGTTCCTCAGCCTTATGATGTTGTGACCCCTCGTATTCAAAAGACTGGCAAAACGCCTCCACAAACCCGCACAATGCCTCAAACTCAGGCATATGACATACCACCACCAAGGGTGCCAAGGGGAAGTCCTAACTGCAAAACTCACGTACCCAAAACTGAGGGCCAGACAACTCCCCCACAGAGTACTTATGACACTCTTCCGCCAACAGATGACAATCTTGTAATTCCACCACGGCCTCCAAAACCACATCTTCCGTCTGCTTATCAGAATATTCCACCAGGAAGCAAAACCTTTGATGGCATGGACCTTTCAGCTGTTCCAGCAGCTCCCAAATCATTGGAAAAACCTTTGCTGTTGGACAGCTACGATATTCCCAAATCAAGCAATCAAACATCTGAGACTTTGGACTTGAGTTCAGTGGCTCCGGCACCAAAGCCGTGTACACCTTTAAATATCCATCCTTACATAAATGCTGCATCGGGAGTGATACAGCCTGGGTACATTGCAATGGATGGAGACCAAGAAGAAGTGTACACAGATATGTCTGTTCTGAGACTTCCGCCCGGGTCTGAGTTCGGACCACCCCTCGATCCTACCTACAGTGACATGAATCATCCGAATGGTATGTCACCTGCAGCTTGTAAAGGTCCGCGAGTTTCTTCTTCAAGTCCAAGACCCATCACAGCATCCAACCCAGAATCAGACACGTACCTGAACCAGATCTGGAGTTCACAGCGCACTAAGAGCTTCAAGAGACATGATGAGAGAAACAAAATTAAGGACACAAGTTTAAGGCAGCCTATTCCAGTAGTGACAGCCAAATCTCCAATGCCTCCACGTCGCGACACTTTCTCCAGTTCGGATGACGAGGATGAGGATGGCTGCAATGGAGTCCACATACCAAAACAGATGAGGGCGGTGCCACCCCCGCCACCAGGGAGTGGTGAAGACAGAGAGCTCAAGTATCTGGACCTCGCTCTGGATGAATACACACAAGAACCTCAGGCCAAGCAGCCGACCACTGGTCACGTGCCTCACTCCACGCCCACCGAATACCGTGAAATAGACTTTGTTAAAACTCAGGCACTCAGTAACACAAAGAAATGGAAAGATGGGCAGATGAAAATGGCTTAA

Transcript

CsqKR_Scaf147_6.8

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR046355	Family	GRB2-associated-binding protein 1-4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45960	GRB2-ASSOCIATED-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf147_6.8 global RNA-seq network