Gene detail

Detailed information of CsqKR_Scaf144_3.22 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf144_3.22	HYALURONIC ACID-BINDING PROTEIN 4	chr6	1517738	1525066	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf144_3.22

TGACTATCAGCGTATGGGGGTAATTATAGGTGCTTCCGCAATTCGTGGCAGGAATTATTTTTCAAGCCAGATTTGAAATATGAATATATTTTAAAATCTTATATTCACTGGTGTTAAATATAATTTTGCACCAGTGCAATAAATAAACAACATCTATAGGTAGGGTACTTCCCGCCACCAAAGCCATTTTTGGCTCTGTGACATCACACGATTTGCTCACAGAGCATGCGCCAGTTTGTGCGGGAAGCACGCCATTTTGTATATTCTGAGGACTAATATCGAAAAGGCCGTAAATCCATTGCAATCCTCTGGGAAAAGAGGAACAATGGACATCCAATACGGCATTGCAGTTTCCAATAAATATCAGTTTTTGAACGATGAAGAAGAGGATCCTTATGAAATTCTCAAACAGCAGGAGGAGGCCAAGTCTAAGAAGAAGGACGAATCCGATAAAAAATCTAAAAATAAGCACGCAAAAAAGGCTGCTCCTTCGGTCGATGCGAAAAATAAGCAAGCTGAAACGACAGTGACAAAGAAAGAAGAAAAACCCACTTCAGCAAGGCCAGAGAGAGGAGGCCGTGGTGGTAGACAAAACCGAGAACCTCGGGAGATTCGTGAAAACGATTCTGAGAGACGCCAGCCTAGACGGCCACCTCCACGAGAACCAAGGGAGCCAAAGGGTGATGAAAATGTGCCCCCAGAATTCAGAGATAAACCTGAAGGAAGCAGTGGATTTAACAGAGAAGGTGGTGAGCGTGGTCGAGGTAGAGGCAGTCGTGGTTTTGGCAGAGGAAGAGGTGGACGTGGAAACAGGGGTGGTTCCAGGGAAGGTTTCCGTGATGGAGGTTTTGGTACTCCCGGAGGTGGTCCAGGTGGTGACAGGCCAAGAAGGGATTTTGATCGCCATAGTGGAAGTGATAAAACTGGCATCAAGGCTGTGGAGAAGAAAGAGGGAGGTGGTGCACGAAACTGGGGAACATTCAAGGATGATTTAGTAGAACCTGTTCAAGATGGTGAAGAAGAACATCGTGAAACCTGGGCATCGGAAGAAGTTCCCGAGAACACTGAACTCAATGAAAGTGGCGAGGTTGAACACGTTGGTGATGGAGAGGAACCAGGAAAACAGATGACTTTAGATGAATGGAAGGCTTTACAGAAACAGAAAAGGACCAAAGTTGATTACAATATTAGGAAAGCAGGAGAGGGCGAAGACAATAATAAATGGGAAAAAGGTGTTGCTTACACAAAGAAAAAGGAGGAAACTGATGAAGAAGAGGATGAGGATGATGAGGATGACGATAGGCACAAGAAAAAGGACCTGTTGGACATTAGGATTACTTTCAATGAGTCGCCTCGTCGTGGTCGTGGTGGACGAAGACCCCGTGATGGGCGCAGTCGCGGAGGAAGAGGTGGTGGCATGGGTCGTGGTGACAGGAAACCACGTGAAACTGCACCAAGGATGGATGATGAAACAGACTTTCCAAGTTTGGTTAAGAGTGCAGCATGAGCTGTTAAGCATCCAGTTGATAACTTGTCTCCAACTGCCCGTTTATTATTTTTCGACTTCCGTAGTTTGCGAAGACTTGGATTTCAGTATAATGGTGTGGATTTTTTTTCTTCTTCAATTGGCTAAACATCATTGCCTGTTGCATTTTAAATTACCTCTAACCTTTTCTCTCTTTATTAATTAATTAATTAAACATTTTTTTTTTTTTAAAAAGAACATCCAGTGTTGGTGTGTGTGGGATCTCAATTCAGGATCAGCTCATGGACAGCACTTCCAAGTTGTGCTGCCACCTTAATTGTTGAAAAAAAAAAACAATTCAGAATTAACAGGAATATTTGCTACAAACAAGTGCTGTGTACTTTTTTCCCCACCCCAGTTTTCTACATTTTTTTTTAAATGAGAAATTTGGGGTTGTATTGTTCAGATGCAGTTCCTTTTGTGTTTATTTTGGACAAAACAATTTCTTCAATACAGACCAAGTATACTGTAAAGTGTACTTATTTTCAATTACATCAAAGATGATAAAAAAAAAAAAAAAAAGTTAATGTTGACCAAAAACTGATTTGTAATTGGCTTCAACATGAAAGACTTTGCCTACCATGTGCAGTGACTTAAAAAGCTTTTTTTCATACTGCCATGTATGTGAAGAACCTTTTTTTTCTGAAGTATGCCAGGTGATTTGAGTGTTCGAATGTTTCATATTCTTTTTTTTTTTCTTTTCTTAAATCCAATTCTATGGTTGAAAATTTAATATACTCATGTTGAAAGTCTTGTATTTTACTACTAGTTCGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006861	Domain	Hyaluronan/mRNA-binding protein	Interproscan
IPR039764	Family	RNA binding protein HABP4/SERBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf144_3.22 global RNA-seq network