Gene detail

Detailed information of CsqKR_Scaf144_13.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf144_13.15	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2	chr6	587728	603717	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf144_13.15

ATGGAAGATGTATTAAGTTCAGTAAAAACATTAACGATAGCAGAATTGAGAGAGCAGTTAATTAACAGAGGGCACAAAATTGGTCCAGTTACAGCAACTACTAAAATATTATTTCAAAAGAAACTTGCCAATCTAATTTATAAAGAAAAGTATGGTGATGTCTCCGGAAATGATGTTCAAATTGAAAGTAAAAGTTCGGAAACAAAACAAGTGCCGGAAAAAGCGAATGATATAAATATTATCAAAGACGATGTTCCGTGTATATATTACGGTATATTACTGGCCAGTGACGAAGCAACAAAAATGCATAATCTGCCAGATGAGAAGCTTGTTTTTGCTGAGAAAATGGCAGCATTTGCTGTTGCTAAGGAACATCCAGGCTCAAGATTCAAAGCTTTCAAGACTTTTGATGAAGCTCTGCAGTTTGTTAAGAAATCAGAGAATCAGAACTGCAACAAGTCTTTGATATCACAGATAAACGAACCCACCAGCACAGAAGTAAATGTGGTGGAAAAGAGCCTGTATAAGGCACCTAAAATGAGAGATCTGGTTACTCTGCGTAACATCATAGAGAGTGGAGATGAAAATCAGTTTACATCAGTAGTGTGGAGTAATCCACGCTATCTGGTGAGCAGTGGAGACACACCAGTCATTCTTCATGAAGGACAACGTTACAATGCCCTCCACACAGCAGCCAAAGCTAACAGGCCAGAAATGTGTCGACGGATTCTAGAAACCATCTTAGACCCTGAGTTTTCAAAACAACTTTACCAGGGAACCAGTGACTGTGAAGAAACCCAGGCACGAAGAGTTCAGTTTCTTGCCGACCTCTACCTCAATATGCCTGACAGAGGGAATGGGGAATCCCCTCTTCATTTTGCCAGTAAGTTTGGTTTCCCAGATGTAGTTGAGGTTCTGGTGGGATACCCTGCCACTGATAGAAACATGAAGAACAGATATGGAGAAACAGCCCACGATGTGGCATGCAGTCGTTGTCAGTTACCTTCAGAAAATGTCAAGAACAAAATAATAGAATTATTGCAAGGTCTGTGCTTTGTGCCATTGTTGAGGGCAGAAGACAACACAGCGTCGCCTGTGATTGGTCAGCCATGGTCACCTGACAAGACTGTCAGCCCTGGTATGCATCTTGGGAAAAGTCCAATAGATCCTCAGCTGGCTGTGCGTGCTCGGGCGGGTCCCATGTCGCCATCCAAGGCAAAGATGTTTTATCAACAGTGGAGTTCACCTTTATCACATTCACCCATAAACAAGAGAAAAATGATAGCAAGCATTAAGAGAGAAGATGGAGACAAAGGACTGGAGAGAATAGGAAGACAGCTGGCTCGTGAGATGCACATCCCGTGGCTGGAGTACTGGGAGTTTCTCGATGCCTTCGTTGACCTGGCTACAGAATCTGGTATCTCAGAGTTAGAGAAACATTTAAAAAAACAGCAATCTGCTCTCACCTTCACCCAGTGTCTGCAGAACATCCAGCCACAGGATATAGTCCAGACATCTGGATTCTGTCCTCCTATTGACCTTAGCTCCAGCTTCTTAGGACAACAAAAGAAGAATCTTATTCAGACAAGTTCACTTTCGGCTTCTGGTGGAATCCATTTGCAAAAGTCTGGTGGAGAGTCAATAAATACAACAGACGGCCATGATGATGGTGATGAAAGGGGTAATGTATGTGGAGATGCTGATGGTACAAAGGTGGATCTTGTGTGCAGTGGAAGTGTTAAGAACAAGATGGAGTTCTGTCAGTTGGGGGATTCTGAGTTGCCTAACAATCTGACAAGTACACCTAAAACAGACAGATGGACATACAGACAGCATCATGCCAGCACAGAACAGGATTACTCACCTGCTTCTAAATCTGACTGTGATGTTTCTGCTGGTGGAGAACCCATTGAAAATGAGTCAATATGTAAGATATCACACATCAGGGCATCAAAATTGGATATTTCTGAAGGAAAATCAGAAAACTCTCATACAGATGAAGTATCAAAACAAACCGATGAAGCAGGATTAAAGGGCAATAACTCTAAGCCATTTAATAGTGGTGACTTGATTGATCAGGAAAGACAAGTGATGCTAAATCCCAACACAAAAGAAAAAGAGAAAATATGTAATAATGCAGAAGTGATTAGTCAGCAAAGGGAAGTAACTCTGACTCCAAACACTTGGGCATATCGTTGCCAAGAACACAAAACATGTGACATGGGTGACAGGTCACCCACTAAATCTGATGTATCCAATTCGGGGGAAACTTCTGATCTGTCAGTCAGTAACAATGATGAAGACATCATCTTGGCATCTTTGTCCAAGTTGAAACTGTCCAATTCAGGTGAAGCAACAGCCCCATTTGTAACAGAATCAGACAGAAATGAATCCAGTGTGTTCTCAACACCAAAACCAGCAGAAGTGTCTTTCAATACAAACCTCAGCAACCTGTGTGCTGACTTTGAAGACAAGTTAATGTTCACACCACAACATTCCTCCTTCTGTTCAGCCATGCCTTTTGGGCAGATAACTCTAAACTTAGGCAAATCTCACCATGCTGCCGAAGCTTTCCGACGTCTTTCAGATCTGAAACTCTCTGAAGAAGAAGAAGTAGTAGAAGATATGCTGTCCCACAATGCACCTGTGATTGTTCTCATAAATAACAATGTTCAGGTCTGTGATTCAGAACACTGTGAGATTGTTGTTGATGTTTGGGTGACAAAAGATGAAGATTTGAAGAGTTCAGTCAACAATGTTTTCCCTGACATAGTTGTCTCCCTTCAGAACAAGGAGACACTGGACCGGTTGCTTCAGGTTGAGTCACCTCAGTTGGTGAATGTGGATGTTACTTGTGAAGAAAAGTACACACTAAGACAACACACAATACCAGTCCAGGCTCTTTTTGTTAAAAATAATCATGAGTCAAATTTCAATGTTCACATACTAGGTTTGAGGCACTCGAAGTCAGACCTGGATGTTTTCCGAGCTGTTAGAAACACAGTGGTAGATGTGCAGAGGTTTCCACTCACTCACAGGTGGATGCAACGGATGACAGTGTTAACATCTGACAACAAACAAAGCTGGCCGAGTCCTTCAAGACTTCGCTCTGAGGCGAGACTCTCAAGAAACACGTCTTGTTTGAGTCCTCTGGTCACTGGTAGTCCATCTTTCAGATCCAGGAGACCAGTTTACTCACCCACAGTCGTGGAAAACACCCCTAGAACTGTCCTCTTTCCACAGTCACCCAAACCCACTGTGTAA

Transcript

CsqKR_Scaf144_13.15

GAAACATCCAATCAGAATTTATCTTATATTTGAACAAGGAAATGGCACCAGCAGATGCTCTTTCAAAATGGAAGATGTATTAAGTTCAGTAAAAACATTAACGATAGCAGAATTGAGAGAGCAGTTAATTAACAGAGGGCACAAAATTGGTCCAGTTACAGCAACTACTAAAATATTATTTCAAAAGAAACTTGCCAATCTAATTTATAAAGAAAAGTATGGTGATGTCTCCGGAAATGATGTTCAAATTGAAAGTAAAAGTTCGGAAACAAAACAAGTGCCGGAAAAAGCGAATGATATAAATATTATCAAAGACGATGTTCCGTGTATATATTACGGTATATTACTGGCCAGTGACGAAGCAACAAAAATGCATAATCTGCCAGATGAGAAGCTTGTTTTTGCTGAGAAAATGGCAGCATTTGCTGTTGCTAAGGAACATCCAGGCTCAAGATTCAAAGCTTTCAAGACTTTTGATGAAGCTCTGCAGTTTGTTAAGAAATCAGAGAATCAGAACTGCAACAAGTCTTTGATATCACAGATAAACGAACCCACCAGCACAGAAGTAAATGTGGTGGAAAAGAGCCTGTATAAGGCACCTAAAATGAGAGATCTGGTTACTCTGCGTAACATCATAGAGAGTGGAGATGAAAATCAGTTTACATCAGTAGTGTGGAGTAATCCACGCTATCTGGTGAGCAGTGGAGACACACCAGTCATTCTTCATGAAGGACAACGTTACAATGCCCTCCACACAGCAGCCAAAGCTAACAGGCCAGAAATGTGTCGACGGATTCTAGAAACCATCTTAGACCCTGAGTTTTCAAAACAACTTTACCAGGGAACCAGTGACTGTGAAGAAACCCAGGCACGAAGAGTTCAGTTTCTTGCCGACCTCTACCTCAATATGCCTGACAGAGGGAATGGGGAATCCCCTCTTCATTTTGCCAGTAAGTTTGGTTTCCCAGATGTAGTTGAGGTTCTGGTGGGATACCCTGCCACTGATAGAAACATGAAGAACAGATATGGAGAAACAGCCCACGATGTGGCATGCAGTCGTTGTCAGTTACCTTCAGAAAATGTCAAGAACAAAATAATAGAATTATTGCAAGGTCTGTGCTTTGTGCCATTGTTGAGGGCAGAAGACAACACAGCGTCGCCTGTGATTGGTCAGCCATGGTCACCTGACAAGACTGTCAGCCCTGGTATGCATCTTGGGAAAAGTCCAATAGATCCTCAGCTGGCTGTGCGTGCTCGGGCGGGTCCCATGTCGCCATCCAAGGCAAAGATGTTTTATCAACAGTGGAGTTCACCTTTATCACATTCACCCATAAACAAGAGAAAAATGATAGCAAGCATTAAGAGAGAAGATGGAGACAAAGGACTGGAGAGAATAGGAAGACAGCTGGCTCGTGAGATGCACATCCCGTGGCTGGAGTACTGGGAGTTTCTCGATGCCTTCGTTGACCTGGCTACAGAATCTGGTATCTCAGAGTTAGAGAAACATTTAAAAAAACAGCAATCTGCTCTCACCTTCACCCAGTGTCTGCAGAACATCCAGCCACAGGATATAGTCCAGACATCTGGATTCTGTCCTCCTATTGACCTTAGCTCCAGCTTCTTAGGACAACAAAAGAAGAATCTTATTCAGACAAGTTCACTTTCGGCTTCTGGTGGAATCCATTTGCAAAAGTCTGGTGGAGAGTCAATAAATACAACAGACGGCCATGATGATGGTGATGAAAGGGGTAATGTATGTGGAGATGCTGATGGTACAAAGGTGGATCTTGTGTGCAGTGGAAGTGTTAAGAACAAGATGGAGTTCTGTCAGTTGGGGGATTCTGAGTTGCCTAACAATCTGACAAGTACACCTAAAACAGACAGATGGACATACAGACAGCATCATGCCAGCACAGAACAGGATTACTCACCTGCTTCTAAATCTGACTGTGATGTTTCTGCTGGTGGAGAACCCATTGAAAATGAGTCAATATGTAAGATATCACACATCAGGGCATCAAAATTGGATATTTCTGAAGGAAAATCAGAAAACTCTCATACAGATGAAGTATCAAAACAAACCGATGAAGCAGGATTAAAGGGCAATAACTCTAAGCCATTTAATAGTGGTGACTTGATTGATCAGGAAAGACAAGTGATGCTAAATCCCAACACAAAAGAAAAAGAGAAAATATGTAATAATGCAGAAGTGATTAGTCAGCAAAGGGAAGTAACTCTGACTCCAAACACTTGGGCATATCGTTGCCAAGAACACAAAACATGTGACATGGGTGACAGGTCACCCACTAAATCTGATGTATCCAATTCGGGGGAAACTTCTGATCTGTCAGTCAGTAACAATGATGAAGACATCATCTTGGCATCTTTGTCCAAGTTGAAACTGTCCAATTCAGGTGAAGCAACAGCCCCATTTGTAACAGAATCAGACAGAAATGAATCCAGTGTGTTCTCAACACCAAAACCAGCAGAAGTGTCTTTCAATACAAACCTCAGCAACCTGTGTGCTGACTTTGAAGACAAGTTAATGTTCACACCACAACATTCCTCCTTCTGTTCAGCCATGCCTTTTGGGCAGATAACTCTAAACTTAGGCAAATCTCACCATGCTGCCGAAGCTTTCCGACGTCTTTCAGATCTGAAACTCTCTGAAGAAGAAGAAGTAGTAGAAGATATGCTGTCCCACAATGCACCTGTGATTGTTCTCATAAATAACAATGTTCAGGTCTGTGATTCAGAACACTGTGAGATTGTTGTTGATGTTTGGGTGACAAAAGATGAAGATTTGAAGAGTTCAGTCAACAATGTTTTCCCTGACATAGTTGTCTCCCTTCAGAACAAGGAGACACTGGACCGGTTGCTTCAGGTTGAGTCACCTCAGTTGGTGAATGTGGATGTTACTTGTGAAGAAAAGTACACACTAAGACAACACACAATACCAGTCCAGGCTCTTTTTGTTAAAAATAATCATGAGTCAAATTTCAATGTTCACATACTAGGTTTGAGGCACTCGAAGTCAGACCTGGATGTTTTCCGAGCTGTTAGAAACACAGTGGTAGATGTGCAGAGGTTTCCACTCACTCACAGGTGGATGCAACGGATGACAGTGTTAACATCTGACAACAAACAAAGCTGGCCGAGTCCTTCAAGACTTCGCTCTGAGGCGAGACTCTCAAGAAACACGTCTTGTTTGAGTCCTCTGGTCACTGGTAGTCCATCTTTCAGATCCAGGAGACCAGTTTACTCACCCACAGTCGTGGAAAACACCCCTAGAACTGTCCTCTTTCCACAGTCACCCAAACCCACTGTGTAAATCAAAATACTCACACCATGTAGCTTTTTACATTGTTTAATAAAGCACTGATTTATCTTAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03020	LEM	LEM domain	Domain	Interproscan
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR003887	Domain	LEM domain	Interproscan
IPR011015	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051108	Family	DHHC palmitoyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12349	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035307	Biological Process	obsolete positive regulation of protein dephosphorylation	Interproscan
GO:0042326	Biological Process	negative regulation of phosphorylation	Interproscan
GO:0051721	Molecular Function	protein phosphatase 2A binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf144_13.15 global RNA-seq network