Gene detail

Detailed information of CsqKR_Scaf144_12.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf144_12.15	PHOSPHATASE WITH HOMOLOGY TO TENSIN	chr6	604690	614861	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf144_12.15

AATAATTTAACCCTTTACCTGCATACGGCTTGCTGTCTTCGTGTTTACATCGTATATTGTTTATGTTGTTTGTTTGTTGTTGTTTTTTTGTTGTTTTTTTTTTCAATTATTTATTTTTCTCTTAAACATGGTTCAAGGATTTTCTAAATGATTTCGAGCACAAAGATCATATGATAATGCCATCATACAGGAAGTTTAAGGATGACAGTGATGACACTGATGATGTTGTTGAATCTGAGAAAGGGGACCAAAGCTCTACAACGGAAAGCCCAGTACAGATTAGAAAAAGTTACATGGACTCAGGTCAAGTGAAGATCTACATTACAGATCAGAACCAGGAAGTAAAAGAATATATAGAGGATCCTGCAGGAAATCCTTATGCATCCAAAACCAAACTTCAATCTCTTCAAAGTACAGTGAGTTATTTTGTCGACAACCTAATATTTCGGGCCATCACAGTTCTTCTGATTTTACTCGATTTCATCCTTGTCGTCATAGATCTGTCTAGGAACAGCTGTGCAGATGAGGACAGTGTGATGGAGATAACCTCTTACGTGATCATCTCATTCTTCGTTTTGGAAGTGTCGGCCAGAATATTCTGTCAAGGATTGCAGTTTTTTAAAAGTGTACTTGACATTCTTGATATGGCAGTGGTCTTCATTTCATTTGTTATTGACATAGTTTTTATTGCCATCGAGACAGAAAAGGTTTGCAAAGAATCAAAAGGAGCTGACTATGCAAAGTTGGTTGTGGTTGGTCGAACTGTTCGAATTATTCGGATTGCACGAATAATTTACCTGATGATTCTTCAGCACAGACAGGTTACCAAGGCAACAAGAAAAATTATTTCACAAAACAAACGCCGATATCAAAAAGATGGATTTGATCTTGACTTATGTTACATTACAGGAAGAGTAATAGCAATGTCATTTCCATCAAAGGGTTTCATGGCATTTTACAGAAATCCAGTTGAGGAAGTTGCTCGGTTTTTCAAAACAAAGCATCCAGATCATTTTCGTATTTATAATTTGTGCAGTGAACGAGATTATGATGAATCTTTATTTAACAACAATGTGTACAGAGTTTACATAGATGACCACAATGTACCCACAATGAGTGATATGCTGGAGTTTACAAAAGATGTGCGGGACTGGATGGCAGCAAACAAACAGAATATTATTGCTGTTCACTGTAAAGGGGGAAAAGGCAGAACAGGGACAATGATCTGTATCTGGCTTATTGACTGCGGACTGTTTGAAGAGGCTGAGGAGAGTTTAACTTATTTTGGGGACCGCAGGACAGATCTCAGTGTGGGTAAATCATTTCAGGGTGTGGAAACGCCCAGTCAGAGTCGATATGTTGGTTACTATGAAAAGTTGAAAAATGATTATAATCGAGAACTGCCACCCAAAACATATCTCAAAATAACCTCAGTGAAGATAGAGGCTATTAATGGTGTAGGTAATGGAGATGGTACAGATCTGTCTATGGAGATTTGGGCTGCAGGCCTGCTTCTGTTTGAATGTAATTTTGGGAGTAACACTAATTGTCAGCTGATAAATTACAAAGACACTGACAGTATTGTTGTTACTTTACAAAACAGTCCTCGACTGGAAGGTGACATCAAAGTGATGTTCCAGTCTTCAAATCCTCATCTTCCTAAAGGATATGACAAGTGTCCTTTTTATTTCTGGTTCCACACAGCTTTTATTGAAGACAACATGTTATATCTTACAAGGCAGGAGTTGGACAATCCACATAAAAAGAAGGTTGCTCACATCTTTAGAGAGAACTTTTCTGTTGAACTACAATTTGAAAGTGCAACACCTCCCAGATTGTGATAAATGAATGGTGTAGTTTTAAAGAGAAACATACTCTGAGATTTCAAATAAACATTTTTCATATTTCATATAACTCATACTCTTAATTATTACACAAATGCAGTTGTTTTTGAATTGAGAGTCAGGCTGTTGCAATCTCCAGAACCAAATGAAATAAAAAGTATTAGAAAATGGCTTCTTCTATCTTGGATAAGACACCATAAAAGTTCAGTTATGAAGAAAATGGAGTCCTGAATCCACCTGTTTCTGCTTATCTGATAGTTCATGGAAATATTCAAGTAGAGATATAACTATATTATTATTTTTTTACTTTCTTAAAGAATTCTATGGATGTTTTTCCACAAAGGTTTCATACACAAATGTACCAAACATTTATTATTTAAATGTTTGATATGTTTGTTTTAAATATGTTTGTTTTAAACATGTTTGAGACATTTAATATTTAAATATAATAAATGTTCAGTAATGTAAATGCTTTAAGTATTTGTTATATAAATGTGTAATACATTCACTATTTAAGTATTTGTTACATGAATGTATAATACATTTTCCTTTCAATTATTCAAAAATGTTCAGTACATTTATAACATAAATGTCTGAAATGTTAAATTTATAAGAAAATTAAATTATTACTAATAAAATTGAAAAATTAAATTATTGTTTGATCATGACTTTTTAAAAAATAATTAGTTTTTTACTTATTCAAGTTTTGAATATCTAACTGTTGTTGTTGTTAACATGTGAAAAGTGACAACCAGTAATATTCAAAAAAATCAAAATGCTGAAACCACATGATGCAACTTTCAGACCAGTATGTCCCCATATGTGAAAATATCCATTTAAAATAAATTTGTTAATACTGTTATTATTATTATTATATTTATTTATTTTAATATTTAATTATTTTGAGGCCATTAATGTTATTATCAGCAATAAGGTGGCTGACTATTCTATAACCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF10409	PTEN_C2	C2 domain of PTEN tumour-suppressor protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR014020	Domain	Tensin phosphatase, C2 domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR027359	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR029023	Domain	Tensin-type phosphatase domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR045102	Domain	TPTE, protein tyrosine phosphatase-like catalytic domain	Interproscan
IPR051281	Family	Dual-specificity lipid and protein phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12305	PHOSPHATASE WITH HOMOLOGY TO TENSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0008285	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0014065	Biological Process	obsolete phosphatidylinositol 3-kinase signaling	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0016314	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0048870	Biological Process	cell motility	Interproscan
GO:0051896	Biological Process	regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf144_12.15 global RNA-seq network