Gene detail

Detailed information of CsqKR_Scaf143_15.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf143_15.7	ANKYRIN DOMAIN-CONTAINING	chr11	17048814	17053022	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf143_15.7

ATGCCTGGACTTCCGCATATACGAAGACGGGCATCGTCGATGTCGATCATTCCCGGTGAAGCATCAGAAGATGGCGACTTTGTTCGTCTGCGAGAGATTCGACAGCAAAGAGTGGAAGTTCCATTCACTTCTCCAGGTCGTAGACTTTCTTACATATCAGAGGCTCCTGGTGTGCCTCGAAAAGTCTCCCATAGTGATATATCCGTGCACCAGGCTGACAGAGCAAAGGAAGTAAATGCCGTTTCAGTGAGTTTGAGCAACTACCTATTCGACCTCGTTTGTAAGGGATCGCCTGAAGAGTTGCAAGTGAAGCTAGACAGTCTCCCTTCTAACACCTCATTAGCTAACAGTATGTATTTGCAGCCGAAAACTCATCAGAATCTACTGCATTATGCTCTCGAGAACAACAGACGTGAGATTGTTAAAATGTTAATTCAGTCACAACACGTCAATTTATTAGCTCAGGAGTACGAGGTGTTCCTAGGTGATATACATGGGAAAAAGAACGCCCTGCATAGAATAACCGAGAATAATGACTTAGAAATGGCAAAATTATTTATAGCTAATATTTCGAGCAGAGACGACTTAATGAAATTACTTCTACAAGAAACGCCCGTTACCATCTCAGGTCAGAGACCAAGGACGTTTCCGTGCGTACATTTAGCCGCCTTCCATGGATTTACGGAAATGGCCGAATTATTTTTGGATTTCGGCGTTGATGTGAATCATATCAATGCCAAGAAAGACACGGCTTTATTGTGGGCAGCTCGCTGGGGTCACGTGACCACGGTCAAAATGTTAATAAATCGTAAAGCGCTGACAGACCTTGAAAATGACAAAGGTTCAACCGCTCTGTATTGGGCTGTGAGATATGGCTTCACTGAAACGGTAGCGCTTTTGGCTGGAATGGGAAAAGCAGATGTTAACAAAACAAGAAAGCTAGGCCTTGTGGCGCCAATAATTGTGGCTTGTGCTTATGGAATGAATGATATTGTGACAATTTTACTTCAGAATGGAGCTGACGTTAATTTCTGTATAAGAGGCGGAGAACGCCCCATTCATCATGCTGCAAGGGAGGGATATAATGATGTCATCCAGACACTTCTTTCAAATGGAGCCAGAATTGACGAAGCAGACGAGAGAGGAGACACCGCATTAATTCTGGCTGCAAAATTTGGACATCCGTTTGTTCTGCACACTCTGGTTAAATGCGGTGCCAACACAAATCATAAAAATCACGAAGGGGAGGATGTATGGATCTTTGCTGTTGACAACGACAACGACAATATCATTAAGGTTTTGATAGAAGCTCTCATGGAGACTGGTGCTATGGTTCTTGACGAAAACAAGCAAGTGTTGCGACTGCGTAAACAGAAATCTCCACTGTTTCAGGCTGCTGCTGGTGGGCACTGTAGTAAAATAGAAATGCTTATTCAGCTGAAATTAGACCCAGCAGCTCAAGATGAAGAAGGAAATAATTTTATGCATTATGCATCCATGGACAACATGCACGAAATTATTAGGAAATTCAGTGACAAATTGAGCGTGGATATTCAGAATAAGAGAGGAAACACTCCACTACATATCAGTACAATTAAAGGACACGGTGAAACAATTCTAGCTCTTCTAGAAAAGAAAGCCAAAGCGAATATTAAAAATGATTTAGGACAGACCGTATTACATGTGGCCGCTTGTTCAAAATTTATTGATCCAAAAACTGTAAAAGAAATATTTGATTACGTCATCAAGTCGCATGCTTACGAAAGCTTAAATGTAGTAGACAAGGAAGGAAATAATCCGCTACATCTTGCAGCAAAATTCGCCAAACCAGACGTCTTATGGGAATTCAGATTTGTCCGATTCAAAGATAAAGGTAAACATGGCAACACGCCATTGCATGCATCTGTGAGGCGAGGTGAACCGGAAGTACTAAACATGATGCTGGACATTTATGAGACGATGAAGCGTGACGCGGACATCAATGAACAGAACAACCAGAAAGAAGGAGTCATCCATCTTGCTGCTTGCCAGGGATTTTTCGAAGGCGTAAAACGTCTCATTCTGTATGGCGCTAATTTGGGTCTCACAGATGAAAACGGTGACTCTGTTCTGCATAGATTAACTCAAGCTTCAACAGTCGATCCACTTCAAACTAAACAACATGTGAAGATGTTTGATCTCATCATAGAAGAGGCAGTAAGATGGTGGTGCATAAAGAACGTCTTGCAGTATCCAGACGACAGTGATGTTCATATCAGATACAAACGCCAAGCAGTCAGCAGTCTAGTAATAGACATTTACAACACGGCCGATATCAACGTTTTGGCACTAGCGTACAAAGTAGGCGCTGTGGAAATTGTGGAAAATATCATGATGATGAAAGACGTCATGTGCTTCGAGGTGCAGAATAAAGTGCGTTTCAACATCACGCACATCACACCACTGACCAACGACTCTTTGACCGGCTTTTGCAACAACACCCGCGTGGATCCCAGACCGTCGTGTATGGAGTGGCTGCTGTCTTTGGAATCCACCGACAGAGCTTCTCAGATCCTGGACATTCCGCCTCTGAAACAAATTGAAAACGCTTACGCATCGGTGGCCGCATGGACAAACATCGTGCTCATAATTTGTCATATCGTCTACATGTCAACGTTCAGCTACTGTTCAAATGCCTTATTAGAGAAACGCAGAATATCACCTTCTGATTCATCGCGTGGCGCACCAGCCATCCTCCTCTATTTAGTCGTTCCCATTGAACCAGCAATATTCATTGGATACGTATTATATAGAACAATTAAATCAGTATGTCTAGGTCAGTTTTCCGTCAGCTATAAACTCCACAAAGAGAGGGACGGCGGTATCATGTCTTTAATCGAGACATACATGTCCGTCTTGTTTACTTTCACATATGCTCTTCTTGTTGTTGTCTGGATCATTCTCTTCTCTATACAGTATCCATACCAGGACTATTTTCTTGCTCCAGCCCTTCTGCTAGGCTGGCTTTTCACCATCACCTTCACACGTGGATTTAAACTGATTCATTATTTCTGGAAGATGATTCAACACATGATCGTACAAGATGTTCTCAAATTTCTTTTCGTCTACCTCTTCGTTCTCCTCGCTTTCTCTTTCTGTGTCCACGTCCTATTTCAAGCTTCTCCTGGACTCATGGCAATTTATTCCTCTCCTCTTGATACAATGTTTCTCTTCTTTAATCTTATGATAGGCATGGGAGAGCTGTTTGATGGCAATGTAAAGACAAATCTAGAGACTGTGGGAAGGTCAACTCTTTATGTAAAAGTTCTTTACATAATATACATGATCCTCGGGACCATCGTCCTACTGAATCTCCTAATAGCCATGATGAACGATTCGTATTCACGTATCCTGCACAGACGACAGCTCGCATGGCGAATTGAGTCTGTACAGCTTGGAGTCGATATTGAGAAATCTAGTCCATGGTGCACAAAACTTTTCAGTCGAGTAAAAATGCATCATGGTCAGATTCTGCCATCACCAGATGACAAAGAAGATATGAAATGGTATATCGAAGTCTCGGCGGATCTCGCAAGAACAAGTCAAACGAAATCTGAACATAGCGAAATAGAGGCTTTGCGGGATTTAAATTATCGGATAAAAAATATGGAGAACAGAATGGCGGATCAGATGAGACATATGCAGTCAGTTCTGGAAGATATTCAACAAGTTGTGATAAAATTGAAAATATCAAAGAAACAAAAATAG

Transcript

CsqKR_Scaf143_15.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13606	Ank_3	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052391	Family	E3 Ligase Complex Components and Neurotoxins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24133	ANKYRIN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf143_15.7 global RNA-seq network