Gene detail

Detailed information of CsqKR_Scaf138_2.44 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf138_2.44	L-THREONINE 3-DEHYDROGENASE	chr15	24664954	24674053	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf138_2.44

GGCCTATGTGTGATGAAAGGACATCTACGGATATGTGATAAAAGTACCGCTACAGATATTACATGCGAAGAAACTAGGGCATTGTCAGTAGTGTAACTGTGAAAATGTCGTCTCTGCCTGCGACCATGAAAGCGCTTGTAAAAGAAGACGCAAACGAATCGTACACATACAAGGAAATCCCTGTTCCCGAACCGAAAGAAGACGAAGTTCTCATTCGAGTAGACTGCGTTGCTATTTGCGGTTCAGATATAAATTTGTACAAATGGAATGATATTGCTCGGACGATCGCCACTATTCCATTCGTTCCAGGTCATGAGTGTGCGGGTACAGTTATCAAATGTGGCCCTAATGCAAGCTTACCGCTAGGGGCAAAAGTTGGTGTTGAAAATCATTTCTTCTGTGGCACTTGTCATCAGTGCCAGTTTGACGACCGTGCAATATGTCGCGACATGGGTCAATTTGGTCACGGGAGAAAAACGCAACACGGAGGATGCTCGGAATATACGATAGTACCCGAGAAGTATTTGTACATGTTAAAGAGAGATCTAACCGCAGAGGAAATAGCAATGTTAGAGCCGTTGGGAGTGGCTCATAACGCTATAGAGAAACTGGAAGTGAAAAGCGAAGAAGTACTCATAATCGGGTGTGGACCTGTTGGTTTATTGGCCCTGGCAGTTGCTAAAGCTCTTGGTGCCAAAAGCGTAATTGGCGCAGACATTGATGACTCGCGGCTAGAACTTGCTAAAAAGATGGGTGCAGATGTTACTGTTAATTCAAAGATGGAAGACCTCAAACAATTTATTACAAAGCAAACAGATGGTCTGGGAATAGGCAGAATTTGCGAGTGCAGCGGAGCTCCTTCCATGGTAAATTCTTCTTTTGGAATGCTCCGGAAAGGAGGCCATATTGTAATGGTGGGCTTGCCCAAAGAGCCTCTTTATGTTGAAAATGTGTTGCAGGATATTGTTTTCAAGGCACTGACGTTAAAAACTGTGCATGGGCGTTTGGTGTATCACACCTGGGAAGAATGTGAGAAACTGATCGCAGACAAGAAGATAGATGTTAATAAAATCATTTCACATAAATTCGCCATGTCAGATTTTGAGGAGGCTTTTAAGACGTTGTTCAGTGGGACAGCCTTTTCTGTTATAAAGAGTGGATATGGAACTGGAGCAGCATTTAGCCAGGGACAACAGAGGCCACAATATGGTCAACCACAACAGTCATATGGACAACCAACACCACCTTATGGACAGCCAGCACAATCATATGGACAACCAACACAACCATATCAATATGGTCAACCACCTTATGGGTCACAACCACCACCATACCAACAACAGGCCCCTCCTCCATATGGCTCACCACAGGGGTATGGTGGACCTCCCCTTCCACCAGGTATTAGTCAAGATTTATGGGGATGGTTTCAGACTGTGGATCAGGACAAGTCGGGGCAGATAACTTCATCAGAGCTGCAGCGAGCTTTGATGAATGGAAACTGGACACCTTTTAATGCTGAGACATGTCGACTTATGATAGGAATGTTCGATACTGATAAAAGTGGAACAATTGGTATTCATGAATTTGCTGCTCTCTGGAATTATATCAAAAGCTGGAAAGATTGCTTTGACAGATTTGATAAGGATAGATCAGGAACCATTGATGCTGGTGAGTTTCACACAGCTCTGAGAACTTTTGGTTACAATCTGTCACCACAGTTTGCTGATCTTGTTGTTCGTAAGTTTGACAGAAGAGGAATTCGAAGTATTAACTTTGATGATTTCATTCAGGCTTGTGTAATGCTTAAAACATTAACAGATAAATTCAGGGTAAAGGATAAACAGCAAACTGGAGTGGTGTTGATAAGTTATGAAGATTTTCTGGAAATGGTGCTGGATAACACACTGATAAACATTTGAATGTTATATGATTTCTTTTGTGAAAAGGATATAGGCAGCTCATAGCTAAGCTTTCATCAAGTTCTGTGATGTGAAGACAGAAAAAGAATAAATGAAACTGAATGTCACAGTAATATGTTACAACTGTAAACAGTGGGTTTGATATTTGATTTGTGGTTAAAAAAAACAGTATTTCTCTGCAAATGCTCTATTTTTTGAAATAATTCCAGATGTTCAAAACTAAATACATTTTTAAACAAAATATTTTTACCTGCCATTTTAATGTAGCATATTTAAGTTTTATGCTTTTAATGTTTTATTATTATTATTGTTATTATTGTTATTATCAAAGATATAAAATTGTATTTTAATACTCATAAATTATAAATAATCTGGAATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR002328	Conserved_site	Alcohol dehydrogenase, zinc-type, conserved site	Interproscan
IPR011032	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013149	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR013154	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR020843	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050129	Family	Zinc-containing alcohol dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43401	L-THREONINE 3-DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf138_2.44 global RNA-seq network