Gene detail

Detailed information of CsqKR_Scaf135_1.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf135_1.18	ACYL-COA DEHYDROGENASE	chr8	23587872	23594632	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf135_1.18

GTTCTCAACACAACAAGCAACCTTGTCTTCACATCTGCCACTAGATATGCTTTCAGATGATGAACGAATGATGAAAGAAACTGTTGCCAGGCTAGCTAAAGAAAAAATCCAGCCTCTTGTCCAGAAGATGGAAAAAGATGGCCAGTTTGACAAGTCTGTTGTTAATGCTTTGTTTGAGAATGGAATGTTTGGTATAGAAATTGACTCAGATTATGGAGGTGCTGGTTCCACATTCATGGTCTGTAACTTGGTCATTGAGGAGCTCGCCAAAGTTGACCCATCCATTGCCATTTGTGTTGACATTCAAAACACTCTAAATAATGCACTGATTATGAGATATGGAACCAAAGAACAAAAAGAAAAATATCTACCTCGGCTGGCAACTGATACTATTAGTTGTTTCTGTCTGTCAGAATCTGAATCAGGTTCTGATGCTTTTGCAATGAAGACTGCTGCAGTGAAACAAGAAGATGGCTACATTTTAAATGGAAACAAGATCTGGATTTCAAGCTCCGATTTGGCAGATATATTTTTGGTGTTTGCAAATGCCAAACCCACTGAGGGTTATAGGGGTATAACTTGTTTTATTGTTGAACGAGGCATGGAAGGTTTTAGTATAGGCAAGAAAGAAGACAAGCTTGGACTGAGAGCATCAGGAACATGTACTCTGCATTTTGACAATGTCAAGGTTCCTGAATCTAACATACTTGGACAAGTAGGTGAAGGTTACAAGTTGGCCATCGGAATTTAAATGAAGGAAGAATTGGTATTGGGGCTCAGATGATTGGTTTGGCTGACGGATGTTTACATCATGCTTTTGAGTATGTGAAAGAGAGGAAACAGTTTGGTAAAAGAATATGGGATTTTCAGGCTATTCAACATCAAATAGCCTACTTGTCCACTCAGATTGAGGCAGCCAGGTTAATGGTGTACAATGCAGCTCGTCGCAAGGAAGCAGGACTTCCCTGTGTTAAAGAGGCTTCCATGGCTAAATACATGTCTTCTGAGGTTGCCCAAGTAGTTACATCAAAATGTGTGGAATTTCTTGGAGGTGTTGGCTTTACAAAAGATTATCCTGTTGAGAAATATTATAGAGATTGTAAAATAGGTACAATTTACGAAGGTACAAGCAACATTCAGCTGAACACTATAGCCAGATGTTTAGAGAAGGAAAGCTCACTGTGAATGTATATACCTACTAACTAAACAAAATACAAATTATCTGTCTGTCTCTCTCTCTAGCTATATATTTTTTTTCATCTTAAATGCAGTTATATCAGGAAGTATTAGAGGTTGACAGTCTGTTATCCACAGTTATAAAATGTGACGAAATCTCTGAAAATCAGTTTATTTTCTTCTTATGGTACATCAACTGAATATCTTGAGCAATTTCACATCATTTGAATGTTTTCCTTACAAACCATGTCAAGTATAAATTATATTTGTAAATTAAACATGATATTATTTTATCTCATGTACAAGTCTACAGCAACAACTTTCATTGTCAGTATTTAACCAGCTCACTGTGTCTGTTTATTACTGTTGCTGTGGAAATATTAATTTGTTTAATTATTGATCAGTGCTATCAGGCTTGCCTTTTACTATGATGTAATTATAGCTTTCTGAAACCTGAAAAATTAACAATTTCACCACAGAAAAAGATTTTGTATACGGTATAATCAGTAATTGTAATTAAAAAAAAGAAAGAAATGAGTAACAGATGTTGATTAAATAATTGTTAAAAAAAAGAATGTTCACTATATTTAGAACATTCAAATAATTGTTACTGATGGTGCATTTTATTTATGTTTAATTTTGGTAGCTATTTAAAAATCTACAACAGCATTTTTGCTATTACTTTATTTATTTTTTAAAAGATTATTATTAAATTTTTTAAGCATTTATTTGTAACTGGTTACACTCTTAGATAACATATGTCTGTTTTCACTTTTTTGCAATCATTTGAAATGTGTGATAGAATAATGTTTGTCAGTTAATGAAAACAGATCTGGATGTTTTACATAATTAATTCCAGTACAAGCTGATATATCAGTCAAATGACAGTGACTTAGCCCCTGAAACACTGAACCTGACATGACAATACTCATTTGTTAAAAACAGAATGTGTTTACAATCATGAATTGTTGTTTGGCAGTATTGCAGATTGAAATTGTATGTGCATTTACAACCTGTGATTAACAATAAAAAAACAAGTTAGTTTTGTCTAATCAGTTCTTCATCATTTCGAATTCTGTTCATTTACTGATATGTAAGAACAAAAAAAGAAGTTTTAAAAATATTTGAATAATATGGTTGATATTTATGTTTTTTAATAATACATCAACATCTTTTTTTCATTTTAAATGTAAATTTTTATGATAATCAGATATTTGATTTAGAAAGCCATTAAAAAAAAAAAAAAAAAAAAAAATGAAATAAAATGAAAACTATTTCAAAAGGATTACCTTCCCTTTTTGTTAAATATATATTTCTGAGCATTTAATTTCTTTTCAAATATGTTCTTGTAATATTGTATGTTATTCGTCAAATAATTATGTTTAATAAAATTAATAAAAACAGGATTTTTCTAAAAGTGAAAAATTTGTAAACTATTTATATATACGGTTTTTAATTTTTATTATTATTATTTTTATTACATTAAAATATCATTAACCATGAGAGATTTTACTGACTAATCTTTGTGTGTAAGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf135_1.18 global RNA-seq network