Gene detail

Detailed information of CsqKR_Scaf135_0.30 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf135_0.30	WD-REPEATCONTAINING PROTEIN WDR1	chr8	23620524	23630380	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf135_0.30

TCACTTCCTGGATAGAAGCCGGCAGGAAGTTTTGACAAAATTTAAAAAGAACTTAATCGAAGTGACAGTGAAGACATTGGAAGTGAAAATATGTCTGTAAACCAAAAAAGTGTTTTTGCAACTCTCCCACGCACTGAGCGAGGTGTACCAATTGTTCTTGGTAAAGATCCCAAAGGCAAAAATTTCCTGTATTGTAATGGAAATAGTGTGATCATCAGGGATATTGCTAACCCACTTATTGCTGATATATACACTGAGCATTCCAAGGAGACAACTGTGGCCCAGTATTCACCTAGTGGTTTTTATATAGCTTCTGGAGATGCAAGTGGAAAAGTTCGCATCTGGGATACAACACAGAAAGAACACATCCTGAAATATGAATATCAGCCAATTGCTGGTAAAATCAAGGACATTGCTTGGACAGAAGACAGCAAGAGACTTGTTGTTGGAGGTGAAGGACGAGAAAAATTTGGTGCAGTGTTTATGTGGGATACTGGTACTTCAGTTGGTAATATTATGGGTATGGGAAAGACCATCAACTCGGTGGACTTCAAGCCCAACAGACCATATCGGTGTGTGACAGCTAGTGAGGATTTCTCTCTAGCATTCATGGAAGGACCACCTTTTAAATTCAAACAAAATTTAAAAGAACATACAAATTTCGTCAATGCAGTGCGATATTCTCCAACAGGAGACAATTTTATATCGTGTGGTGCTGATGGAAAGACCATAATATATGATGGAAAGACAGGCAGTGTTTTGGGAGAACTGGGAGACCCTGCACATAAGGGTGGAATATATGGACTGAGTTACAATGGAGATGGATCTCAAGTTTTAACTGTGAGTGCTGATAAAACAGCTAAGATTTGGGACATTGAATCCAAGTCTGTAGTAACGGAATTCAAAATGGGGTCTGATTTGCTGGATATGCAGGTTGGATGTCTGTGGCAAGGCAAATATATCCTTACGGTGTCTCTTTCTGGCTTTATCAACTACCTTGACATTAATGATCCTGCAAAACCATACAGAATTATCAAGGGCCACAACAAACCAATAACAAGCATGGCCTTAACTGAAGATAAATCCACAATTTTTACGGGTGCCAAAAGTGGAGAAAGTGAAGAAATGTCAGGAAAGGGACATAGCATACAGATTCAAGGCATGAACATTGTCAATGATGATTTAATAACTGTTGGAATTGATGACATTTTAATGCTATCTTCAGTAAGCAGCAAATGTTATGGGAATATTAAAGAAAAGACTGATTCGCAACCTAAGTCGGTCTCCAGTGTTGATGACATTTCTGTAGTAGCATGTATTAATCATTTGCTGGTATTTAACAGGGGAAGTAAGATATCTGTCCATCCTACAAAATATGAATGTCAGTGTGTAGCTGTTCATCCATCCAAATCAGAGGTTGCAGTTGGTGGGCCTAGAAGTATTTTCATCTATAGCCTGAATGGAGGCGTGCTGAGTGAAAAGAAACAGATAGAACTGAAAGAGAAGGTGACTTCTATGCAGTATTCTCCAGATGGAAAATGTCTGGCATCTGTAGCAGAGGACAAACACTGTTATGTTCACGTACTACCAGATTATGAGATGTTATTTGGCAATATAAGTCATACAGCACGTGCTCTCTGTGTTGGCTGGTCTCCAGATTCTAAACATCTTGCAACTGCAGGATTGGATAACAATATAGTGGTGTGGAAAAATGAAAAAGGTCGTTATAATACAGTGGCTACTGCTGTTGGAGCGCACAAACAAAGCATTGTGAACTGTGTGTCATGGCTGGATAATAACACTGTAGTCTCCTGTGGACAGGATTCTAATGTTAAACAATGGGTTGTCAGTTATTCCTGAAAAATAAACTACGATTTCACAATAACTTGGAGAATATTTCACAAATAATATTAAAGAACAATATTTTCAGATAACTAAACTGCACTTTTATAAAATTCCTTTTACTCCTTTTTATGTAGATTTCAAATTTTCACACAGTAAATCAGTTTGTACAAAGATTTTGATCATTTTAATAATTTATAAGAACATAGTAGTGGTATGATATGTCATTGAAATTACTTTATTGCTATGTGTTATAATGTATTCTGTTACTTTATACAATACTTTTGCTAGTATTCTGTGGACGTGCAGTGGTTGTTTTTTCTCTTCTTTTTGAAGTTAAGGAAGAAGGGATTAATGATGACAACTTTATAACAAGGACAGTAAAAACTTTAGATGTTAAAAATTTGTATTACTTTTTATTTTTTATTTTTTATTTTATGTTTTTAACATACTTGCATATTATTAAAACATTTATTGTATTTAAAAACTCAGCTTTCACAGTTGAGTATACAGTTTTGATGAAATATTTATTAGAAGGAAAGGTGGAATGTTTAATTCGTAGCTATAAATGTCTTGGCTGTACATCACTAACCATTTGGCCAACCATAGAAAACATCTTTCTTTCCCAATTGTATTTTTTGTTTAAAGTGATAGTGCAAATATTGGTGACATTATTGTGTATATATCTGGTTTGTTGTTGTCTTTTTTTAAAATATGAAGTTAGATGTAAAAGAGAAAGGAAGGAAAATGAAAGTGTCAATGAAACTTTGCCAACTTGTATTCTTTGAGATTTGATTATTAGTGAACTAATAACAGCTGCCAATAAGGCTATAAAATGTACACAGAATAAGTGTTTGCACACACCAGGAATCCAACACCATATACTGGATGATAGTCAATAAATAGACCACTCACATTTCTTATAGCTTGATTTTTTAAATTATATTTATTACATCTGTGTATAGTGCAAAAAAATGCTTTAAGACACTAGATAGCTTGGTTGGACATATTTGTGATGTAGCTTTATTAAACTGTTGATAATTTTTTATTTTTAAGACGGATGAAGGCAGGTGTAAAAGACAAATGACCATTTAATGAGGTTTTTTAAATTATTTATTTATGGCATTTTTATGAGGACACAAAACAATGTATATTTTTCTTTTCTTCTTTCTTTTTTTCATGGTTCTGCGAGTACCAATACAGCAAATTAACAGCTGCTGTATATAAGTATTCCACTTTAAAATCATG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19856	WD-REPEATCONTAINING PROTEIN WDR1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030042	Biological Process	actin filament depolymerization	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0040011	Biological Process	locomotion	Interproscan
GO:0045214	Biological Process	sarcomere organization	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf135_0.30 global RNA-seq network