Gene detail

Detailed information of CsqKR_Scaf130_15.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf130_15.13	GMP SYNTHASE-RELATED	chr10	5926713	5940102	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf130_15.13

ATGAACGGATCTACTGCGATATGTATTAGTGGGGATGCAGCAAACAGAGAAAGAGTTGCCATTCTTGATGCGGGGGCTCAGTATGGAAAGGTGATTGATAGAAAAATCCGGGAACTGAATGTGGAATGTGACATTCTTCCACTGGATACTCCAGCGTTCACACTAAAAGAAAAACTTTACAAAGCTATTATAATATCTGGGGGTCCAAGTTCAGTCAATGATGATGATGCGCCGTTGTATGATGCAGATATTTTCCACTGTGGCCTGCCTTTGTTAGGAATCTGTTACGGTCTTCAGATGTTGAACAAAGAACATGGAGGAACAGTAACTAAAGGCTCATCACGAGAGGACGGCCAATTTGAAATTAATGTTGACACAAAGTGCCTTCTTTTCAAAGGTTTATCGAAATGCCAGTCAGTTCTTTTAACACATGGAGACAGTGTTGATGTAGTTGCTAAAGGATTCAGTGCTGTTGCCCACTCAGGAAAAATTGTTGCAGCGTTGGCGAATGAAAAGAAGAAACTGTACGGTGTTCAGTTCCATCCTGAAGTTGACTTGACTGTGAATGGAAAACAAATACTGCGCAACTTCCTCTTTCTGATCGCAGGCTGCACCGGCACCTACACGATGAAGTCACGGGAACTCACGTGCATTGAAGAAATCAAGCGAGTTGTAGGTGACCACAAAGTTCTGATGTTGCTGAGTGGGGGTGTTGATTCCACGGTATGTGCTGCTCTGTTACACAAAGCTTTAAAACAAGACCAGGTAATCGCCATCCACATAGACAACGGCTTCATGAGGAAGAATGAAAGTCGCCATGTCGAAGAGTCGCTTTGTGGTATTGGACTGAAGGTTAAAGTGATCCAGGCAGCACACACATTTTATAACGGAACAACCACAGTAGCTATTCACAAGAACGACCCAAACTCTCGAAAGAAGAAGACAAACACACTGAATACCACAGCCAACCCGGAAGAAAAACGAAAAATCATCGGCGACACCTTCATGAAGGTCGCCAATGAAGTTGTGGAAACCATGAATCTCAAACCACAAGATGTTTATTTAGGTCAAGGTACCTTGCGACCTGACCTCATAGAAAGTGCTTCCTGTCTAGCTAGTGGGAAAGCAGACGCAATTAAAACTCACCACAACGATACCGAATTGGTGAGAGAACTTCGTAAACAGGGCAGGGTAGTGGAACCTCTGAAAGATTTTCACAAAGATGAAGTGAGACAGATAGGCAAAGATCTCGGACTTCCTTTAGAATTAGTACAGAGGCATCCTTTTCCAGGTCCTGGTTTAGCCATTCGAGTTATATGCGGAGAAGAACCATTCATGGAGAAAGGTTATGCTGAAACAAATATTCTGCTGAAGATTGTAGTCGGATTTGCACAGTTTTTAAAAAAACCTCATTCAATGATTCACAGGGTGAAATCCTCAGCCAGTGAGGAGGAGCAGCAGAGAATGGAGGAAATCACCTCCAGATGTCACATGTGTGCTACCTTGTTACCCATCAAGTCAGTAGGTGTTCAGGGTGACTGCAGATCATATAGCTATGTAGCAGGTATTTCATCAGACGAAGATGTCAAATGGCAAGATCTGATTGATCTTGCTAAAATAATACCTCGAATCTGTCATAGCATTAACAGAGTGGTGTATATATTTGGCGGAGCTGTAACTTATCCAATCGAAGATATCACTCCTACCTATTTAACCGAAGGAGTTCTCAGTACCTTGCGTCAGGTGGACTTTCTCGCCACAAAGGTGCTGCACGACTCAGGGGAGGCAACTCACATCAGCCAGATGCCGGTGGTGTTGACCCCACTGCACTTCAATCGCGACCCCGTGATGCACCAGCCTTCGTGTCAAAGGTCAGTGGCTCTGAGGACGTTCATCACAAACGATTTTATGACGGGAATTCCGGCCATACCGGGAATACATATACCAGTAGAAGTAGTAATGAAGATGGTTGAGGAAATAATGGCTGTACCAGGAATATCCCGAGTTATGTACGATCTAACGGCAAAACCACCAGGAACCACTGAGTGGGAATGA

Transcript

CsqKR_Scaf130_15.13

GTCAAGGTCAAGATTGCATTTCTTTTGAAACTTTTTTAAGTCTGAACCTCTATTAAATTTACAGTTTCCGGAAATCTCAAGTGTTACACATGCGCAAAGGTTTCCGCGTAATATTTTTTTATTCAGATAGGACTAACGATTGTTTTCCTAAGAATCACACCGACAGGATAAATTTGTTGTTGTAATGAACGGATCTACTGCGATATGTATTAGTGGGGATGCAGCAAACAGAGAAAGAGTTGCCATTCTTGATGCGGGGGCTCAGTATGGAAAGGTGATTGATAGAAAAATCCGGGAACTGAATGTGGAATGTGACATTCTTCCACTGGATACTCCAGCGTTCACACTAAAAGAAAAACTTTACAAAGCTATTATAATATCTGGGGGTCCAAGTTCAGTCAATGATGATGATGCGCCGTTGTATGATGCAGATATTTTCCACTGTGGCCTGCCTTTGTTAGGAATCTGTTACGGTCTTCAGATGTTGAACAAAGAACATGGAGGAACAGTAACTAAAGGCTCATCACGAGAGGACGGCCAATTTGAAATTAATGTTGACACAAAGTGCCTTCTTTTCAAAGGTTTATCGAAATGCCAGTCAGTTCTTTTAACACATGGAGACAGTGTTGATGTAGTTGCTAAAGGATTCAGTGCTGTTGCCCACTCAGGAAAAATTGTTGCAGCGTTGGCGAATGAAAAGAAGAAACTGTACGGTGTTCAGTTCCATCCTGAAGTTGACTTGACTGTGAATGGAAAACAAATACTGCGCAACTTCCTCTTTCTGATCGCAGGCTGCACCGGCACCTACACGATGAAGTCACGGGAACTCACGTGCATTGAAGAAATCAAGCGAGTTGTAGGTGACCACAAAGTTCTGATGTTGCTGAGTGGGGGTGTTGATTCCACGGTATGTGCTGCTCTGTTACACAAAGCTTTAAAACAAGACCAGGTAATCGCCATCCACATAGACAACGGCTTCATGAGGAAGAATGAAAGTCGCCATGTCGAAGAGTCGCTTTGTGGTATTGGACTGAAGGTTAAAGTGATCCAGGCAGCACACACATTTTATAACGGAACAACCACAGTAGCTATTCACAAGAACGACCCAAACTCTCGAAAGAAGAAGACAAACACACTGAATACCACAGCCAACCCGGAAGAAAAACGAAAAATCATCGGCGACACCTTCATGAAGGTCGCCAATGAAGTTGTGGAAACCATGAATCTCAAACCACAAGATGTTTATTTAGGTCAAGGTACCTTGCGACCTGACCTCATAGAAAGTGCTTCCTGTCTAGCTAGTGGGAAAGCAGACGCAATTAAAACTCACCACAACGATACCGAATTGGTGAGAGAACTTCGTAAACAGGGCAGGGTAGTGGAACCTCTGAAAGATTTTCACAAAGATGAAGTGAGACAGATAGGCAAAGATCTCGGACTTCCTTTAGAATTAGTACAGAGGCATCCTTTTCCAGGTCCTGGTTTAGCCATTCGAGTTATATGCGGAGAAGAACCATTCATGGAGAAAGGTTATGCTGAAACAAATATTCTGCTGAAGATTGTAGTCGGATTTGCACAGTTTTTAAAAAAACCTCATTCAATGATTCACAGGGTGAAATCCTCAGCCAGTGAGGAGGAGCAGCAGAGAATGGAGGAAATCACCTCCAGATGTCACATGTGTGCTACCTTGTTACCCATCAAGTCAGTAGGTGTTCAGGGTGACTGCAGATCATATAGCTATGTAGCAGGTATTTCATCAGACGAAGATGTCAAATGGCAAGATCTGATTGATCTTGCTAAAATAATACCTCGAATCTGTCATAGCATTAACAGAGTGGTGTATATATTTGGCGGAGCTGTAACTTATCCAATCGAAGATATCACTCCTACCTATTTAACCGAAGGAGTTCTCAGTACCTTGCGTCAGGTGGACTTTCTCGCCACAAAGGTGCTGCACGACTCAGGGGAGGCAACTCACATCAGCCAGATGCCGGTGGTGTTGACCCCACTGCACTTCAATCGCGACCCCGTGATGCACCAGCCTTCGTGTCAAAGGTCAGTGGCTCTGAGGACGTTCATCACAAACGATTTTATGACGGGAATTCCGGCCATACCGGGAATACATATACCAGTAGAAGTAGTAATGAAGATGGTTGAGGAAATAATGGCTGTACCAGGAATATCCCGAGTTATGTACGATCTAACGGCAAAACCACCAGGAACCACTGAGTGGGAATGACAAAAAGTATCTGAGTATGTTCAGGCAGTTCTAGTTTTCGTTAACATCAAAATAAAAATAAAAATAAATAAAGCTGCCAGATAATTCATCACCCTATCTGTGATTTTTAGAAAGAGATTTAATAAAAATGAAATAATGCTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00958	GMP_synt_C	GMP synthase C terminal domain	Domain	Interproscan
PF06508	QueC	Queuosine biosynthesis protein QueC	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001674	Domain	GMP synthase, C-terminal	Interproscan
IPR004739	Domain	GMP synthase, glutamine amidotransferase	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR018317	Family	Queuosine biosynthesis protein QueC	Interproscan
IPR025777	Domain	GMP synthetase ATP pyrophosphatase domain	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11922	GMP SYNTHASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003921	Molecular Function	GMP synthase activity	Interproscan
GO:0003922	Molecular Function	GMP synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006177	Biological Process	GMP biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf130_15.13 global RNA-seq network