Gene detail

Detailed information of CsqKR_Scaf130_14.9 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf130_14.9	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	chr10	5892566	5897680	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf130_14.9

ATGAAACGTGAGAAATTAATTGAAACTGAATGTGAATCACTGCTGAAGAAGAAACAGGCCACCAGTCTAGAAGAACTGATAACAAAAGATGTGGTTGCAAAACCTTCATACAGCAGCTTGAAAGAAGATGAATTCATGGTGGACCCTTTTTTACCTGATGTTTTAATATTTCCACCTGGGACAGAATTTCACGAACATCACCTGTATGATTCAGGCAGCATTGTTTTACAAGATAGGGCAAGCTGTTTTCCTGCTCACATTCTCTCTGCTCCAGAAAACAGCATCGTCATCGACTGCTGTGCTGCGCCTGGCAACAAAACCAGCCACGTTGCTAGTCTGATGAGAAACACTGGAAAAATATTTGCTTTTGATCGCGACCGGCTTCGTCTGAACACGATGAAGTCGCAGCTGGTTCGATTAGGAGTGGAAAACACTGAACTGTTTGGTAGAGATTTTCTCTCAGTCAAACCAGATGACCCGGAATTTTCTGCAGCCGAATACATACTTGTTGACCCATCCTGCAGTGGGTCTGGTATCGTCACTCGACTTGACTACCTCACAGAAAACTCATCCTCCAAACAGAGGCTGAGAAGTCTTTCAAACTTCCAGGCATCTCTTTTGAAACATGCCTTAAAATTCCCAAATGCCAAAAGAATTGTTTATTCCACCTGTTCTCTCCACCCTGAAGAAAATGAAGGAAGTTGTGGAGGATGTGCTTAGTCAGTTCCAAGAAGAGTTTACGCTGAAAAAAATAGTTCCTGACTGGCCAATGAGAGGGCGGTCTGATTACTGCTATGGTGATGCAATGATTCGAATGTGTCCTGAAGAACATTACTCTAATGGCTTCTTTGTAGCCTGTTTTGAAAGAACTGCTAGGGGATAACTCTAAAGATGTCAAGGGAGAGCATTTAGAATATTCAATACAGGGAAATGTCTTGAGAGTGGGAAAAAAAGATGTATATGGAAACAAAGAAACTTTTGCAAATGATGACAAGACCACACAAATTTCTGATGACACAAATATAATTAGGGACCAAAATTATGATGATTTGGTTCAAGAAAAAAGTAACAAAAAGAAGAAGAAGAAAAATAAACATAAAGAGAAGAACGAAAGCCATCAGGATGGCCTTGAAAGTAGTGTTAGCAGAAAGGAAAAAAGAAAAAGTGGTAAATCTGAAAAAAGTTTTGAGACTAACAAACCGGATGAAGAAAGTCATTCTAGCAGAAAGAAAAAGAAAAAAAAAACACAAATTGGAAAATGAAAGTACTGAAGAGAGCATATTGGTGAAATATGACAAAGGTGAAGAAAACAATGTAAGAAAGAAGAAAAAGGAGAAGAAACTTAAAACAGATGATGAAAATGTTGAACAGGAATTTGAAAATGACAAAGTAGAAAATACTTTTACTGACAAACAGAAGAAAAAATATGCAACACAAACTAGAACTAATGTTTACAAAGAAGAAACTCAAGTGAAAAGTTGTGAAGAAAATAACAGTTGTAAGAAGAAAAAGAAAGAACATAAACTCAAAAATGAAAACTGTGAAGAACAGATATCAGTTACCTTTGATGAAGATGCAGAAAATGGTTTCAACAAAAAGAAAAAGAAACACAAACTGGAAAATAAAGACATTGAAATTGAAGAAAGTGAGATTAGCAAGAAGAGGAAAAAGAATAAGAAACATGAGTTAGAAAATAAAAACAATGAAGAGCAGAGATCAGTCATTTGTGATAAAGAAGAAGATAATGGAATTAACAAGAAGAAAAAGAAGAAGCAGAAGAAACATAAATTAAAAAATGAAAATACTGAAGAGCTGACACCAAGAGAGGTGGATGATGACAGTTGTGTTAGAAAAAAGAAAAAGAAATCTAAACATGAGAATATTTTCAATTCACCTTTACTAAATGAAGAGAAAAAGAAGGAATGTGAAAATCACAGACAGTTTGATGAATCTTCCAAGTTAGTGCCTAGTTGTGAAGAAACTAGCATTAAGAAAACAAAGAAGAAGAAGAAACATAAAAGTTAAAACAAAAACAAAATAAAATAAATAAATAAAAATAAAATTATAATAAAAACTGCAAATCAGGGTATGGTTGTGTGCACTGATAATTTTATTTTTCTTAATATTTAAATAATTAAGAAAAATAAAAATTTCAAATTTTGAGGTTTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF21148	NSUN5_fdxn-like	NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001678	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR023267	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049560	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR049561	Domain	NOL1/NOP2/NSUN 5/7, ferredoxin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf130_14.9 global RNA-seq network