Gene detail

Detailed information of CsqKR_Scaf12_67.45 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf12_67.45	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	chr15	20593131	20600061	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf12_67.45

AATGAAGATAGAATACCTCAGCAGCCTGCTCCGCAACCGATTCAGCCGCAATATCCTTCTTTCAGTTATTTCTGCATTTTTTACATTTTGCATTATATTTCTTAGCATTTTTGTGTGTAGTGTGCCCGCAAGTTTTTGTAAGGCTTCAAATGTGCCCCGACTTCAAAAAGTTTGAGAACCACTGTTCTAGAGGATATAAACGTTAGTGCTATAATATAATGCAAAGAAGTTATTTACACATGAATTAAACATAGGTGGGGTTTTTTTCAGTATATTCTTCATTTATCTCCATGAAACTTTTCCCGAGCTAACGACGTCCATGCAAATACCTGTACATAAAATATGCGTCCAGTTTCACTGATGCAATGTAACCAAGGCATTAATAAGCGGGAGCGAAGGGAGACATCTGTAATATTAATCTGTTGAGACATTTTAAAATTACGTCCTTATAATATATGGTGAATCCGAGTACGTATTTGTTTTATATTTACAACAGTTATTATTTCATCATCTAAAACGTTCTTAAACTTTATAATTTGACTTGTTTTATTATACGCTAAAATGTTCGCAATTAATTCTCATTGAGTCGAAATCATGGCGACTGGGAAAGCCCAGGAAGTCGTAGATACGGAAAATGTTAAACAGTATACATTCCCGACAGAGCCGGTACCAAGACTCAGCTGTTCTGATCCAGAAGTGGATAAATTAATTTCAAAAGATCAACCTGTTGTTTTAACAGATACAAACCTAGTAGAATCTGCTCTTCACTGGGATGTGGATTACCTTAAAAAGCATATTGGCAATGCAAACTTCACTGTGTTTAGTTCAGATACAAATAGGTTTTTATATTACGATGACAAGAAACTAAAATATGTTCCAAATTTCAAACCACCTACAAGACATTCAGAAATGACATTTGAGAAATTTGCAGAGAGAATTCAGGATAAAAATTCATCTAAAAGGTATTATCTACAACAAGTTCTGAATGATACAGTAGGTCCTCAGATCGTTTATGATTTCACGAGGTTCAACTGGAGCTGGGTTACGGAACAACAAAAGAAAAATAGATGGGGAACTCTTACATCCAATCTTTTGTTCATTGGAATGGATGGGGTGCTGACACCATGTCATTATGATGAACAACAGAATTTCTTTGCTCAAATCAAGGGTTACAAACGATTTCTTCTCTTTGATCCTGTTATGTTTGAATGTCTTTATCCATATCCAGTTTATCATCCACATGACAGACAAAGTCAGATTGATTTTGATAATCCAGATTTCGAGAAGTTTCCTAAATTTAAAGATTTGAAAGGATTAGAAACAGTGGTTGGTCCTGGTGATGTGCTTTTCTTGCCAACATACTGGTGGCACCAAGTAGAATCATTGCCTGGTCTTGGAAACACAGTGTCTGTGAACTTTTGGCATAAGGCTGGTCCTGTCGATAAAATTGTTTACCCATTGACAGCCCAACAGAAAGTGTCAATGATGAGGAATATTGAAAAAATGATAACAGATGCTTTAAATAATGCAGCTGAGGTGCCACCATTTTTCCAGAATATGGTAATAGGAAGGTACACGTGAAATGGAGATCAGATATACTGCTAAGAGAATTTTCTAATATGTATACATGATTGTGCCATCCACATGATGTAAAATTGGACTTTTAATAATTTTGCATATTTATAGTGCTAAAACAGTGCTTTACTATATTTTTAAATTAAAAATTTCTGCAGTGACATATCTAATCAGTGTGAATTAGACTGCAAGGATTTAAGGAAGGCGGGTTCCTCCACACAACAGTATGAGTTTTATACAGCAGATAAACTCTGTCCTCAATAACGCTTTAGTGCCCCTGTTGTATATTAAGATTGCCTAACATTAAGCTCTAAGCCTAAATATGAATTCCATTCATATTTCATGTACAGATGACACAAATTTTTTAAATAATATTTTTGAATAATTAGTATTTAATAATTTGTAAGATAAAGTTTGTTAGCAAAACGATACAAAAACAATACAATATCACTATTTTTGCTGCTTGGAAAAACTTATTGATTTTAGAATTTTGGATAAGGGATCCTCAGCCTGTATTACAATAGTTAATTAAGACAGTTAGTGATTACTAATTTTTGAAGTGATTACAATTACTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347	Domain	JmjC domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR027452	Homologous_superfamily	Hypoxia-inducible factor 1-alpha inhibitor, domain II	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12461	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0036139	Molecular Function	peptidyl-histidine dioxygenase activity	Interproscan
GO:0036140	Molecular Function	[protein]-asparagine 3-dioxygenase activity	Interproscan
GO:0042265	Biological Process	obsolete peptidyl-asparagine hydroxylation	Interproscan
GO:0045746	Biological Process	negative regulation of Notch signaling pathway	Interproscan
GO:0071532	Molecular Function	ankyrin repeat binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf12_67.45 global RNA-seq network