Gene detail

Detailed information of CsqKR_Scaf12_3.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf12_3.7	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	chr15	14152259	14161835	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf12_3.7

GGTATGCAGCAGCGAGCTCCTGGACACATGCCGATGGGCCAGGGACCAAGTCCAGGTCCAGGACCCATGCCAACCAAAGTAAATATGCCAAATATGAACATGTACAACCCCCGACGTGCAACTCCCTATCCAAACCCCCATCAGTTTCTGCAGGCCAAGCGAGGACAGCCTGTCCACTACCCTAATGGAACACAGGTTGATTTTGTTCCTGGTCCTCAAAGTCCATATGGTCATCAGCAATTCCCAGGCAAACCACAGTTTCCTCCAACACAGCAGCCATTGCCGTCACCCACGTACGGCCCACCTCAGGGCATGAGGCCCAACGGACCAGGGCCTTACCCAGCTAATCAGAACCCTTACATGACACAGAACCAGTATCCTCCCAGCAGAACACCAGGACAGGGACCTCCAGGCTTCAACCAATTTCCAGGCCAGGTGAATGAACAGCCAGCATATTCACCAATCCATGGCAACCCTACACCTCCCATGACTCCAGGAGCTGTACCACCTGGTTATACGACAGGGGACATCAAACCAAATTTTGGAGATTTTAAACCGCAGCTGCCCATCAAAAAAGAAAATGATGAGTTGCGATTAACGTTTCCTGTGCGGGATGGTGTTGTGTTGCCGCCGTTTCGACTGGAACACAACCTTGCTGTCAGTAACCACGTCTTCCACTTACGGGAGTCAGTTTATCAGACGCTGATGTGGAGATCTGATTTGGAGCTGCAGCTGAAGTGTTTTCACCATGAAGACAGGCAGATGAACACTAACTGGCCAGCGTCTGTGACGGTCAGTGTAAACGCCACCCCACTGACCATAGAGCGTGGAGAAAACAAATCTTCTCACAAACCACTGTACTTGAAAGAAGTCTGTCAGCCTGGGCGCAACACCATCCAGATCACAGTGACAGCTTGCTGTTGTTCTCATCTGTTTGTGTTACAACTAGTACACAGACCCAGCATCAGATCTGTGCTACAGGGCTTGATGAGAAAACGTTTACTGCCTGCTGAACACTGCATCACAAAAATCAAAAGAAATTTTACAAACGTGCCAACAAGTAATAGTTCAATAAATGGTGAAGATGGGGTGGAACAGACAGCCATCAAAGTTTCTCTGAAATGTCCGATAACATATCGGCGCATCACACTACCTGCAAGAGGCCACGACTGTAAACACATACAGTGTTTTGATCTGGAGTACTACTTGCAGCTGAACTGTGAGAGAGGAACTTGGCGGTGTCCTGTTTGCAATAAAACTGCACTGCTGGAAGGGCTGGAGATTGACCAGTATATCTGGGGTATTCTAACAAACCTGAGTAACACAGAGTTTGAGGAGGTTACAATAGACCAGACAGCCAGCTGGAAACCAGTTCCTGTGAAAACAATAAAAGAAGAGGAACCTAACACTGAACAGTGCAATGCTGGACGCTGGATAAAGGCAATGTCTCCGGCCAGCATGCAGATGCCCACAATGAACAATGTGGACTTAGGTCCTCGGGCCTCACCCTATTCCTTACCTGCTCCTGGTTCTCAAGAACCACATATTGGTCAACCTCTCAGACATCCAGAACATGCTGGTACCAATGGGAATCACATGACGCAAAACAACCAACCACAGATGGGACATCAAAATGGCGGTCCCCCATTGAATCATGCACCTAATGGGGTGACAGTCCCCTCCAACCCCCCTACAAACGAATGCCACATATTGTCAGATCTGAACTTCGACCCTGCTACTATTATTGATGGTGATGCAAGCACACAGTCAGGATTAGATTTATTACCCGAAAACCTGGGTGACCCTATTGAACTGTTGTCGTATCTGGGACCACCAGAACGAACTGACTCTGCCAATCAAAACAGTAGTGTGAACAATGGAACAAATGCTACAAACACTAACAGTGACGATTTATTAGCATTGTTCGAATCGTGAATATTGTCTCCATCTTCCCAACCCCTGTGATTAAACTCTTTCATTGTGGAAGGGACTTCATACTTGACCTTTCCATATTTTTTTGTCCGAAATGAATTGGGACAAAAAGTGTTGTTTTTTTTTCCTTTTTAAACATATTCATTTTAAATTCTGTTGGGAAGAAGAAAGCAGAGGGCTGTGCACTGAGCAAAAAAGGAGACAAAGATTGGAAAAAAAAACTGAGAAAAAGAAAATATTTCCAGTGCTGCAAGTTCCAATCATGTGAATTTTGTCAGCTCACCACAGCCATTGACTGGTAGGAGCAGACTGATTGAGCCGGAAGTCAAGAGAGAAGAAATGAAAAGCTGGGCTTACCAAGAAACAAGGGAAGCAATTCTTGGTCAGGGGAAGTAACCCACGTTTAGGGAGGTAACTCATGATCAGGGAGAAGTAGCTCATAAATAAGAAATGGCTTGTCCATCTTGTTAGTGGGAAGATCTTTCTTGATACTTTTGTCTAAGATAATGATGAATAATGCCTCACAGACGTAACTCTAAATAAAAATATATATATTATATACATCTATATATATTGTGAAATGTTTATCAAAAAATTGAAACAAAAAGGAAAAACAAAAGACTTTCCTCAAATAAGCCATTTCATTGTACAGTTTTGTTTATTTTTTTCTGTTAATTTTTTCTGGACATTGGTGTGAATGTGATAACGATGTCATATTCATTTTGTTTCCTCTGAACAAATCAGGACATACAATTTCAAGGGATTCATATCAAATCAACGTTGTAGAGGCAGCAGAACTGAAATCACATTTTTATTAAACTTTGTTTTGTTTTCTTTGTTGACATGGGGGCTAATAATTATTTAACAAAAAAAAAAAAAAAAAAATTCTAAAAAAAAAAAAAAAAATGACAACAAAAAAACAAAACAAAACAAGACAAAACCTCATTGGTGCGAGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-MIZ

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02891	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004181	Domain	Zinc finger, MIZ-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016925	Biological Process	protein sumoylation	Interproscan
GO:0030374	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0061665	Molecular Function	SUMO ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf12_3.7 global RNA-seq network