Gene detail

Detailed information of CsqKR_Scaf127_9.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf127_9.10	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60	chr3	19764222	19780673	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf127_9.10

ATGACCTTCACCTTGTTCATTATCCTGCCAACAGACAACGTGTGCTCCGTGCGGCACCTCAACTCCGGCGTCTCTGTGCGCGAGGTGCGAGGACGTCTGGAGCTCGTGACGGGCATGCCCGCGCACATCTACCGGCTGACGTCACCAGACGCGCAGCTCCTGCACGACGAGCATCAGCTCGTGCTCGACCAGAACGTCTGGGACGGTTTCATTCTCAGAGCGAAACTCTACGACAGCTGGACGGACCTGTTCCACTGGGTTCTTCAGGGAAACGTGGAAGAGGTGTACGAGAACGGCGGAGTGTCGTTTAAAAACGGGAGACGCATGTCTACGGACGAAGAGCAGACGAAAGCTGAAGACGTCATACAGGAAAGGGGCTTCGTGGCACTGTTTCTTGCCAGTTTCTCTGGTCTGGTTAAAATGTGCGAGATGCTCATTAACACAGGTGTCGGTGTCAATGGGAAAACTGGCTACAACAACTCTGTGTTACATGCAGCCTGTTGCAGAGACCGAGAACGGGTTGTGGACATACTTGTTCAACATGGTGCTATCCTTTCGTGCAAGAATTCAAATGGGGACACACCCATGGACGTAGCTAGGAAAAGTTTCTCCAAAAATTGTGTCAGAAAAATAAGAACATTCCAGTTCAGTGTGTCTCTTCCTAACAGGTTTGCCAAAAACACGCAGACGCTTTCAGCAGGGTTTAGAAAAACAAACCTTTCTTACGAACCACATCCGCCAGCCTCTTCAAGACCTGGAACTGCACGATCTACAACCTCTTCAAGACCTTCAACGTCAAGACCTACAACGTCTCCACGACCTACAGCATCTTCAAGACCTTCAACTTCAAGACCTACAACATCTCCACGAATTACGGCATCTACAAGACCTACAACATCTCCACGACCTACGGCATCTTCAAGACCTACAACGTCTCCACGACCTCCAACCACTCCTCCATCTCATCAGGGTAGTGAGAAGACCTCGGTTAGAAAACAGTCACACGCGATCCCTCCCAGTGAACCGAAGCTGTGTCCACGCTCGTCTAACGAGTTTTTCATGTGGGACACAGACAACAGCAACACTCGAGCAGCCAGCGCGTGCAGATTTCGACTGGCGATCGACGTCAACCCTGGAAAGCCAGTCATCAGCTGGGGAGATACAGGAACGCGTCTTATCACTTGTGCAATTAACAGACAGGAACCTGGCAGAAAGGCTTTTCGGCAGTCACATCAGTCCATTCTCAAGAAGAGGAACGAAGAAAACAATAGTTCGGTGGAAACTTCAACCTGTTGCGGTGACAGTGTTAAGAGTCATCTTGGCCAGAGTGAACGTGAAAGTCACGTGTCGTTCGTGTCTGTTCCGGACTTGGGTAAGGACTCGTCTGTCGGGAGCAGCTGTGATGAGAGGAGTGTGCAAACTGCGCCGGACTTTCAGCAGCATTCACAGCTAAAACCACGTCCTCCTGGAAGTAAGCTGCTTCTGTCAAGACAGAGCAGAAACGAGTCGTGGAAAACAAAGAAACGGAGATTGATATTAGCGGAAACCCAGAAGAAGTTTGAAAGGGATTTGTTTCCAAACAGAAGGAAAGAAACGTTCGATGAGTGGCTGCAAAGAAAACGCAGAGAAGAAAGACAAGGGAGTGAAGAATCCGATTCTGACGACAGCGACAGTGAAAGAGAAGAAAGAAACGCAAAAGCGTTTGCTGAATGGATGAAGCGCCAGAGGGAGAGAGCTAGGCGTGGTTCGGACCACGTTACAGTAAAAGATCTTTATCGAATGAAAAACAGGCCAGTGAAGGGGTTAATCACAACAGACATTGCATTGCAAAACACAACGGAGGACGTAGATGCAAGTAATTATGCAAAGGCTTATAAAGAATGGTGCAAGAAATACCGGAATCAGGAGAAAGACAGAGAAACGAAAGAGGATATCAGACTTAAGAAAGAGAAACTGGAAAAAAAGAGACAACAGCTATTAACTATGGCCATTTCGTACGACGAATGGATGGAGCACACGGAACAGCGAAAACAACTGATGAAAGAAATTTTGCAGGCCAGCATGGAAGAATTAAACAAAATTGAGGAAGAAAAGTTAAAACGACGAGCGCCTCGTCAAATATCATTCGAGGAGTGGAAGGCGAAGAAGAAGCAGAACATGAAGGCTCTGAAAGTTGCAGACACAGGCAGAATGAGCAAAATGGCAGGAAATCCAGCCAGAGTCGACAAGATTCATACTCTTCGAAAAGCTAAATCAGTGATAAAGACACTGAAGAAATCAAAAATCGTGTTTTTAGACTGTAAAGTGTGTAAAGTGGCTGATTCCGAACAACTATCGCTCGTTCAAGCCTGCACGTGGGACAAAAAAGTAATAACAAAACTTATCTCTGTGTGCGTGCCGTGGTGTCGAGGGGTGTGTACTCTTATAGACCGAACATTCCTGTCTATATATCAGCGATTCCCAACCCAGCTAGCAACCGAAATCAGCGTCCTGTGGTTCCTTGTAGTTCACGACTGTGGGTGGAAATGTGCAACATTTTTCAACCTTTATGGAGTTGACATTCTTCCTATGTTTGACATACAGATTGCACAACGTGCCCTTGACGCCAAGGAGAAAACGACAACAATGTCTAGTGTGGAGGAGCGTTCTTTAAGTAAAATGTGTAAAAAATACAAGGTTTGTACACATCCAGATGAAGAAATGGAAAATGAGGTTAACAAAGGAAAGATGTTGATGGTTGCAGCCATGGACGTTACTCCATTAGTTCCTCTTTACGCAATACTAAAAACAAGACTCGCTGGTTCAGGCTATGAAAACCATTTCCGAAATATGTGTAACGAATGTCGCTGGAGTAAAATAAACAAAGAGAAAGCAAAGAGTTTTAGAGTTCAGCGTGAGATTAGTGAACTGTTAGAAATTCTTTACGTGAAGCCAAACTACCCTCTGTCAAAACAACAGAAGAAAATGCTTCAACGTTAA

Transcript

CsqKR_Scaf127_9.10

GAATTAACACCACCCACATACAAATACCACAGCGATCCCAAATTAATACTCACAGGATACACACATATAATAGTAGATAGATCACACAAAGAAACATACATTACGCGCACAGTTATCAGGATTATTACATTATTCAGATTACTAGTATGTACACGGGGAATATACATTCTTGGGTTGAGTTTTATTTTTATTTTCATCTCTGCCAGTGTTACTCAGACCCCACACCGTAAGCAGCATGATGATGAACCAAATCATGTCGACGTTGTTGTTGTTGTTTTTATAACCTTTATCTGATTCATCTACCGAATGTGTTCTGTCACTTCAAAATGATCTGCATTGTGCCGTTTGAACAGTATCACTGTGTCTAAAGAAACTACAACACGCTTTAATTCACGTCTTTTCTTCGTCCCGGGTGAAAGACCGTCCATGAATGGACGTTGTGTACTTGGCGCCAAGACGACCGCGCGTTCTGTAAGCAGACGACAAACGACTGGTAACAAACGTGGAGGTAAAAACTACGCTCGCTGGATGTACGTCCAGGAGAAATCCACTTTCATATCAAACAGAGTCTGGGATGTGACGTTTACTTTTTCAAAAACGAGGAACTGTCAGGATAGGCGGTGTAGTTTGTAGCTGAGGAAGAATGTGTTTTGAGATTTACTCAGAGGTCCTGGGAGTCAGTTTACTAAGTGGAAATCAAACATGGTTTCAGTCGAGTTTACTGCAGTTCGTTTGGAATAAAAACGTGAGAAGTCGAAAGTCAAACGACCACTGACAGAAGCGGCGAGATTTCAGTCGCAATGACCTTCACCTTGTTCATTATCCTGCCAACAGACAACGTGTGCTCCGTGCGGCACCTCAACTCCGGCGTCTCTGTGCGCGAGGTGCGAGGACGTCTGGAGCTCGTGACGGGCATGCCCGCGCACATCTACCGGCTGACGTCACCAGACGCGCAGCTCCTGCACGACGAGCATCAGCTCGTGCTCGACCAGAACGTCTGGGACGGTTTCATTCTCAGAGCGAAACTCTACGACAGCTGGACGGACCTGTTCCACTGGGTTCTTCAGGGAAACGTGGAAGAGGTGTACGAGAACGGCGGAGTGTCGTTTAAAAACGGGAGACGCATGTCTACGGACGAAGAGCAGACGAAAGCTGAAGACGTCATACAGGAAAGGGGCTTCGTGGCACTGTTTCTTGCCAGTTTCTCTGGTCTGGTTAAAATGTGCGAGATGCTCATTAACACAGGTGTCGGTGTCAATGGGAAAACTGGCTACAACAACTCTGTGTTACATGCAGCCTGTTGCAGAGACCGAGAACGGGTTGTGGACATACTTGTTCAACATGGTGCTATCCTTTCGTGCAAGAATTCAAATGGGGACACACCCATGGACGTAGCTAGGAAAAGTTTCTCCAAAAATTGTGTCAGAAAAATAAGAACATTCCAGTTCAGTGTGTCTCTTCCTAACAGGTTTGCCAAAAACACGCAGACGCTTTCAGCAGGGTTTAGAAAAACAAACCTTTCTTACGAACCACATCCGCCAGCCTCTTCAAGACCTGGAACTGCACGATCTACAACCTCTTCAAGACCTTCAACGTCAAGACCTACAACGTCTCCACGACCTACAGCATCTTCAAGACCTTCAACTTCAAGACCTACAACATCTCCACGAATTACGGCATCTACAAGACCTACAACATCTCCACGACCTACGGCATCTTCAAGACCTACAACGTCTCCACGACCTCCAACCACTCCTCCATCTCATCAGGGTAGTGAGAAGACCTCGGTTAGAAAACAGTCACACGCGATCCCTCCCAGTGAACCGAAGCTGTGTCCACGCTCGTCTAACGAGTTTTTCATGTGGGACACAGACAACAGCAACACTCGAGCAGCCAGCGCGTGCAGATTTCGACTGGCGATCGACGTCAACCCTGGAAAGCCAGTCATCAGCTGGGGAGATACAGGAACGCGTCTTATCACTTGTGCAATTAACAGACAGGAACCTGGCAGAAAGGCTTTTCGGCAGTCACATCAGTCCATTCTCAAGAAGAGGAACGAAGAAAACAATAGTTCGGTGGAAACTTCAACCTGTTGCGGTGACAGTGTTAAGAGTCATCTTGGCCAGAGTGAACGTGAAAGTCACGTGTCGTTCGTGTCTGTTCCGGACTTGGGTAAGGACTCGTCTGTCGGGAGCAGCTGTGATGAGAGGAGTGTGCAAACTGCGCCGGACTTTCAGCAGCATTCACAGCTAAAACCACGTCCTCCTGGAAGTAAGCTGCTTCTGTCAAGACAGAGCAGAAACGAGTCGTGGAAAACAAAGAAACGGAGATTGATATTAGCGGAAACCCAGAAGAAGTTTGAAAGGGATTTGTTTCCAAACAGAAGGAAAGAAACGTTCGATGAGTGGCTGCAAAGAAAACGCAGAGAAGAAAGACAAGGGAGTGAAGAATCCGATTCTGACGACAGCGACAGTGAAAGAGAAGAAAGAAACGCAAAAGCGTTTGCTGAATGGATGAAGCGCCAGAGGGAGAGAGCTAGGCGTGGTTCGGACCACGTTACAGTAAAAGATCTTTATCGAATGAAAAACAGGCCAGTGAAGGGGTTAATCACAACAGACATTGCATTGCAAAACACAACGGAGGACGTAGATGCAAGTAATTATGCAAAGGCTTATAAAGAATGGTGCAAGAAATACCGGAATCAGGAGAAAGACAGAGAAACGAAAGAGGATATCAGACTTAAGAAAGAGAAACTGGAAAAAAAGAGACAACAGCTATTAACTATGGCCATTTCGTACGACGAATGGATGGAGCACACGGAACAGCGAAAACAACTGATGAAAGAAATTTTGCAGGCCAGCATGGAAGAATTAAACAAAATTGAGGAAGAAAAGTTAAAACGACGAGCGCCTCGTCAAATATCATTCGAGGAGTGGAAGGCGAAGAAGAAGCAGAACATGAAGGCTCTGAAAGTTGCAGACACAGGCAGAATGAGCAAAATGGCAGGAAATCCAGCCAGAGTCGACAAGATTCATACTCTTCGAAAAGCTAAATCAGTGATAAAGACACTGAAGAAATCAAAAATCGTGTTTTTAGACTGTAAAGTGTGTAAAGTGGCTGATTCCGAACAACTATCGCTCGTTCAAGCCTGCACGTGGGACAAAAAAGTAATAACAAAACTTATCTCTGTGTGCGTGCCGTGGTGTCGAGGGGTGTGTACTCTTATAGACCGAACATTCCTGTCTATATATCAGCGATTCCCAACCCAGCTAGCAACCGAAATCAGCGTCCTGTGGTTCCTTGTAGTTCACGACTGTGGGTGGAAATGTGCAACATTTTTCAACCTTTATGGAGTTGACATTCTTCCTATGTTTGACATACAGATTGCACAACGTGCCCTTGACGCCAAGGAGAAAACGACAACAATGTCTAGTGTGGAGGAGCGTTCTTTAAGTAAAATGTGTAAAAAATACAAGGTTTGTACACATCCAGATGAAGAAATGGAAAATGAGGTTAACAAAGGAAAGATGTTGATGGTTGCAGCCATGGACGTTACTCCATTAGTTCCTCTTTACGCAATACTAAAAACAAGACTCGCTGGTTCAGGCTATGAAAACCATTTCCGAAATATGTGTAACGAATGTCGCTGGAGTAAAATAAACAAAGAGAAAGCAAAGAGTTTTAGAGTTCAGCGTGAGATTAGTGAACTGTTAGAAATTCTTTACGTGAAGCCAAACTACCCTCTGTCAAAACAACAGAAGAAAATGCTTCAACGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039323	Family	Ankyrin repeat domain-containing protein 60	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22677	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf127_9.10 global RNA-seq network