Gene detail

Detailed information of CsqKR_Scaf127_20.31 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf127_20.31	MALONYL-COA ACP TRANSACYLASE, ACP-BINDING	chr3	20900422	20904909	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf127_20.31

CAGATGCTGAGATGGTTCGATTTCATGTTTTGCGGATTATTTGTTGTAATTTTTATAAGTGTAAATATTTGAAGATTGTACAGATGTAATACTGTTATGAAATAATACTGTTGTTAATATATATTAATTTATCACTTTTAATATTATTTTGTTAAATAAATGTTTTACGACATGATTAATACCGCTACAGTTTACGGTCGATCATCAAAGCATGTGGAGATAATATTGTAATAATAAAGAATACAATCATAAGAAAATGTTTCCTGCAATTTCATTTAGCATATATTGCAGAAATAGTTCTTTACTTATAGAAACTTTAAGTAAGAACTATTTATGGCCTATTCATAAATCATATTCTTCTAGGTATTCATATTATGAAAACGATAAATCAGTGGAAGATACAAAAAAAATGAGAATTCCTCGAAGAATTATGAAAAGGGCATCAAAACTTGGATTAAAAGATGTAGACCTTTATACTTATAATAGACCACAGTCACAGGATAAGGACCAGACTAAATTACATCACTCATCAAAAGACATTAAACAACTTTTGACAGACTTAGAATCTGCTCCTGATAGTGATATCAAAGCAGACCCACCAGAATTTCCATCAGATATTTCTCAAAATATGAACTGGTTTCGAAATCAAGGAAGAAAATCAATGAGACCAAAGATTGATCCTTGTCACACTTCCATTATTCTGTTTCCAGGTCAAGGCAGTCAGTTTGTTGGAATGGGAAGAAAACTTCTTCCATATCCTGGAGTTGAAAAATTATATTCTGTTGCAAGTGAAATTCTAGGATATAATTTATTAGAACTCTGTTTAAAAGGACCTAAACATGTTCTTGATCAAACCATTCACTGTCAACCAGCAGTAACAGTAACCTCTATAGCTGCAATAGAAAAACTGAAAGAAAATTATCCTGAGGCTGTAGACAATTGTGTGGGTACTGCAGGTTTCAGTGTGGGAGAATATGCAGCCCTTGTATTTGCTGGGTCACTGTCATTTGAAGATGCAGTGAAGATTGTAAAGGTGAGAGCTGAAGCTATGCAAAGTGCATCAGAATCTGAGGCAGGTGGAATGATGAGTGCATTCATTGGACATGAAACAAAACTCAACTTTGCCCTGCTGACAGCACGTGAATATTGTAATCATCAGCTTGGCAGGACTGGAGCAGTTTGCTGTGTTGCTAACTATCTCTATCCAGACTGTAAAGTTATTGCTGGTCATGATGAGGCATTAAATTTCCTTGAGAAAAATTACAGAGACTTTGGAATTCGACGTTTGAAACGTTTGCCAGTAAGTGGTGCATTTCACACAGATATGATGCGATCTGCTCGAAGTGCTGTGATTAAAGCACTGAAAGAAACAGAGTTAGAAAAACCTTTAATACCAGTTCACTGCAATGTGAATGGAGAACGTTACCGAAATGCCAGATCAATGATAGATCTTTTAGGTCAGCAGATATACAAACCAGTAAAATGGGAGCAAACTATGCACATTTTATACTCACGAAACAAAGGAGAAAACTTTCCAAGAACATTTGAGGTGGGTCCAGGGAGACAACTGGGTACACTTATGAAACTTGTTAATGCCAAAGCTCATGCTTTGTACAAGAATATTGAAGTATAAATATTGGTTAAAACACTGAATTTTTTGGTAAAGTTATTTAATTGTAATCACACCGAATCCTAAGCAAAAACACACACACACACACACACACACACACACACACACATACATTCACTCACTCACTCTCACTCTCTCTCTTTCCCTCCCACAATTCTATAAATCTTACTGGCTTTTGATCAAAGCCACGATTATCAAGTATATTAAATTATTTTCATTTCACAATACTGATCAGAACAGTTAATTAATGTGAGTTATAAAATAGAAAACAGATATTTGATAATAGTTTAAAGTACAAACGGCTCAGTGGTAATCATAGGTAGGTAACTGGTCTACAATGACTGATGAAATTTGAGAATATTAAAGTTTATTTTTTATTTCTTCCTATTTTTTTTTTTTTAAATGAGAAGTATTCTTCACTTTTGAGAAAACCATACAAATTATATAAAAAAAATACTCCATTTATGACCATATACAGTATATATTTTAACATCTGGTTTTGAAATACATATACAAATTATTACAAGTTTGTTTAGAGAAACACTCAGGACCCACAGCTTATTTTGAGATAGAGTGACATTTCAGACTGAGAGCTTTTTGTATTTGTTTTGTTAACAGTAATACTCACTTCAACAGATTTAAAAACAATTTGTTTCCCCCAGCCTAACATTAATGCTATAAAACAAAAGGAACAGAATTTTTCAAAGGCAATATCAAATTTACTTGAATCAGAATGTGTTTGAGCTAGATATAATCTATTTAGAGATACAAATGAGCATATTTTGATCATGGATATACCTCAGGACAGTAAATAAAACAATTACAAACTAGTGTTTTCCAGAATAATAGACTATTTTATACTAAATCAATCAGAGAAGAATAAAAAAAACATTAAAATTTGAGTTATCTGTTGTTTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00698	Acyl_transf_1	Acyl transferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001227	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR014043	Domain	Acyl transferase	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR016036	Homologous_superfamily	Malonyl-CoA ACP transacylase, ACP-binding	Interproscan
IPR052760	Family	Mitochondrial malonyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47170	MALONYL-COA ACP TRANSACYLASE, ACP-BINDING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016740	Molecular Function	transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf127_20.31 global RNA-seq network