| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf124_7.21 | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 | chr15 | 25707284 | 25711366 | + |
| CDS | |||||
| CsqKR_Scaf124_7.21 | |||||
| Transcript |
| CsqKR_Scaf124_7.21 |
| Protein |
| CsqKR_Scaf124_7.21 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04410 | Gar1 | Gar1/Naf1 RNA binding region | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007504 | Family | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 | Interproscan |
| IPR009000 | Homologous_superfamily | Translation protein, beta-barrel domain superfamily | Interproscan |
| IPR038664 | Homologous_superfamily | H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23237 | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000454 | Biological Process | snoRNA guided rRNA pseudouridine synthesis | Interproscan |
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0031429 | Cellular Component | box H/ACA snoRNP complex | Interproscan |
| GO:0034513 | Molecular Function | box H/ACA snoRNA binding | Interproscan |
| GO:0042254 | Biological Process | ribosome biogenesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf124_7.21 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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