Gene detail

Detailed information of CsqKR_Scaf11_5.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf11_5.13	EUKARYOTIC TRANSLATION INITIATION FACTOR 2A	chr2	16035461	16049475	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf11_5.13

GGACGGTATAACGCGTGAATTCATGAGACTTTAATTCCAAGATGTCTGCGCCCTTAGCACTTCGAGGCTCTGAGGGAGTTTCTATGGTCAGTGGACCATCAGACTTGGAATCAACATGGTCGTTCAAAGGAGATGACAACAACAATTGCAAGTCCATGTGCTTCACAGAAGATGGGTCTTTCTTTGCCTGGTGCAATCCTACCAGTATACACATAGTGGAAACATCATCATATGAAAAAATACACGAAAGAGAAAACCCTAAAGTTACACAGATGAAATTTTCATCTCATGGCAGCATCCTAGCAACCTGGACGCCTTATACAGTTGATCAAAGTACAAAGTCTGGGATTCCAAATCTACATCTGTGGGATGTGAGTTCAGGAAAACGAGTAAAATCGTTTATTCAGAAGAAACAGACGAACTGGTGTCCACAGTGGAGTCATGATGATGGAATCTGTGGCAGAAATGTCAACAATGAGTTGCAGTTCTTTGAAGATAACAATTTTGACACAATAAAGACAAAGTTGCATTTACAGAAAGTTTCTGACTACAGCATCGCTCAGTGTGCTAAACCATACACTGTCGCAGCGTATGTACCTGGCAGCAAGGGTCAGCCTTCATACGTGAGAGTCTACAAGTATCCACATTTCGGAGGTCAGACGGCAGCCATTGCTAACAAGAGTTTCTTCAAAGCTGAGAGAGTAAACCTGTACTGGAACAAAGCAGGGACTGGACTTCTAATCCTGACATCAACAGAATCATCAGATTCATCGTATTACGGAGAACAAGGTTTACATTACATAGGAACAAATGGAGAAAGCTGTCTTGTGCCTCTGTCTAAAATGGTCCAATCTACAGCATGGACTGGCACCCCCGTTCACACGAGTTCACTGTTGTGTATGGATACATGCCATCCAAGGTGACTGTGTTTAATCTGAAATGTGAGTCATTGTTTGACTTCGGCACAGGACCAAGGAATCTCGTTTGGTACAACAGTCACGGAAACATTCTGTGTCTGGCTGGGTTTGGCAATCTGAGCGGGAACTTGGAATTCTGGGACATGAAGCAGAAGAAGCTGATCTGCCAGACGAAGGCTCCAGACACAACCATGTTCATGTGGCACCCAGACGGCGAGCATTTCGTCACGGCAACCTGCTCTCCACGGTTACGAGTAGGAAACTGTTACAAGATCTGGCACTACACAGGAACAACCCTGTCACACTGCAGCACGACACAGGGCAAGGAACTGTGGGAAGTGGCGTGGCAGCCTGCCCTGCCCGGGGTTTACCCTGAGAAACCTGTCAGGTACAGACCGGTGGAATCTGTGGAGGGGGTGCAGCAGCCGATGGGTAAAGTTGCTGTGTACCGACCTCCTGGTCTTCGAGATAAACCAGCGAGCAAACCGCTGGACGAATTAGAGCCTCCGTCCAACATGAAAGCTGTAGACCCAGACAAACCACTCACCAAGAATCAGAAGAAAAGAGCAGCAAAAAAAGCAAAAGCTGTCGAAGAGAAGGAGAGCCAACCAGCTGTTGCTGCCCCAGAAGTTGTTCACCCAGCAACGCGGTCGGTTTCCTCCGAAGTGTTGAACAACGCTGACCCAGAAACACTGAAGAAAATAAAAAATCTTAAAAAGAAGTTACAGCAGATAGAGAAGCTCAAAGAACAGCAGAAAGCAGGGAAACAGCTGGAACTTAATCAGCTCCAGAAGTTAAAAACAGAAGAAGCTCTCCTCAGTGAACTGGAAGACCTCTCCATAGGCTGATGCTGCTAGTTAGGTGGAGGAAAACAACACAGAATATCTGTTCTGTTGTAATTTCTGTTACTGTGGTGCTATAATGCTGAGGTGAAAACCGGTTTTTTGACTTCAGGGAGGTCAGGAAAGAGATAAACAAATGAGTTTACCTTTCATCTTTGTCAGACTTGATTGTGAACTTTACAGAGAAGAAATCAGAAAGAAAGCATTTTAGTGTTTCATGAAAAATGAGAGGAAATAATTGCATACTAGTTTTGTTTGGAAACAAAAATTAAAATTAAAAAATAATAATTTAATTATTATTGACAAATATTTTCTTTTATTATTGTTCTGTTATGATTTTATTTGTGTTTCTTTAATTTTTTGGAAAGTTTGATAAAATTACTCCGTATTCAAATTATATGATTTTGTTTTTATTTGTCACATTTTCAAGTGACGTTTTTTTTTTTTTTTTTTATACAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08662	eIF2A	Eukaryotic translation initiation factor eIF2A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011387	Family	Translation initiation factor 2A	Interproscan
IPR013979	Domain	Translation initiation factor, beta propellor-like domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13227	EUKARYOTIC TRANSLATION INITIATION FACTOR 2A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf11_5.13 global RNA-seq network