Gene detail

Detailed information of CsqKR_Scaf119_6.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf119_6.38	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	chr6	41797121	41800576	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf119_6.38

CGGCAGATTAAAAATGGCTGCAAGGGCAATAGGATCGGCGACTGTTAGAGCGATAAAAGGGAAAACGATGATTCCACATCGAGCTCCTCTAGTTTTGACTCAGTCGGCTGTGAACAGATTGAAACAGCTAATGGAACAACGACCTGACATGGTTGGAATAAAGATTGGTGTGAAAACACGAGGGTGTAATGGTTTATCATACACACTAGAATACGTTCAAGAAAGAGGAAAATTTGATGAAGAGGTAGAACAAGATGGTGTAAAGGTGTTTATTGATGCTAAGGCCCAGTTAACATTACTGGGGACAGAGATGGATTATTCTGAGTCAAAACTTATTTCTGAGTTTGTATTTAATAATCCAAACATCAAAGGGACATGTGGATGTGGTGAAAGTTTCAATGTTTAGCAGAGAGAGAATTGTGTAGTGGATTATTACAAACCTTATTATGCAGTGGCTGTTGATGCAAGAATGAGAAAATGACTTGTAGATATCTAGATATATATATATATATATATATAAATACTTATTTAAACTGTAGTGATCAAACTTTCTTTGGATAAAAATCAGGATTCTAATTTCTATACATCAAGTATTCTACTGAGGATAAATACTTTCACAATATTCTGTTTAAGTCAAGGATACAAATCATGGTTTTGTTCAGTGATTTTATACAAGGATAAAATTTAATACAAAGATTTATGACAGTTATCCTATTAGGATGTAAATCAGGATCATATTCAATATAAATCAGCAATTATTAGGATACAAATCAGGATTTTATTCTATTTACATCTATCCTTTCAAGGATAGAAATCAGGATTTAGTACTTGAATGAAGTGTCCTATTATAGATATAGATAATGGAACAATTTTATTGTTGGTGTTACCAAAGATGAATCATGTTTAAAAATTTGAAACTGAAGTTTGTGCTTTAATGTTTGTTTACAATTCTGTTCCTATTTAGACATTTTCCTTTGTGTGTGTATGTGTGTGTCTGTGTGCATGACAGGGCTACTTTTTCAGTATTGTTGTTTTTAACAATCATCTTTTACTGTTTGTAAGTTATCCTGTTTGTGAAGTTTCAATATTTATTTAGTGATGTTGTTATTTATAGGTTATTCTTTGTTAACTTTTGGTGTTCTTACTAACATGTAACTTTGTTTCAGGGTTTTTTAATATTTTTTTTCTTTCACAGTATGTCCTATTTATAGCAACTGTGTGTTAACTGTCAACACTGACAGTGTGTTTATATATAGTGAAGCATCATTTTATACCTCTGCTGAAAAACTAATTCGAAATACTTCACATGTTGTGAAATGAACCTATGCATATCAATGTTTTTTTTAAATATATATTTTTTTCATCTATGTATGAAACCAAGTATATAGTAGCTTTTATATCCATTTTTTTTCAAAAAAATAAATAAATAATGTTCTTTTAATTTCTGTTACAACACAGTGAATATCACGACATTTCCTAATACTGTTTGCAGGTTTAAACTAATTTAAATACTTAAGTTTTTTCTGTCTACAAGAAAGTGATTCATGTTCAGATCGTGCTCATATTTACATCAAGATAGTTTTTATACAGATAATTTATTTTATCGTTTCTAACTTTTTCTTCTTTTTTTTCCATTCTGTATTTTAAAGTTCAGCTGGATCTTTATAAACATTTGTACTCTATCTGTTGTTTTTTTTCCATGGAATTTCTAATCTTTCACAATGAAAGAAATTAATAATAGAAACTAACAGTCTTGATTAAACTTGGAAATTATTTTTAACTAATTTACAATCACTGCAAAATGCTATCATGCCCAAGAAAAATAAGTAAATATAAAAGTGTATTTGATTATTTTTTAGTTATACAGCATAAGTTTAATAAGATTAAGAAAAAAAGAAAAAAAAAGAAAATAAAGTGTGAATTTAGCAATAAAATGCATCTTTGGAATTGATATAGTTTTAAATGTGTAAAAGATTGGGATCTGAAATGGAAAACAATATAATATGAGTAATGTATTTCATTCTCTTTTTTTTAAATTTATTTTTTACACTAGTTGTTTCATAACTTTTATATAATTAATTATTAAAACTGTTAATCATGTGTTAATACAAATTACAGACTTCAAAAGACTTTAATGATACTGTCTTTAATGGAAAATACATTTTCTGTCATGCTAGATATTTATACTGATTGTGAAGATGTAAAAAATATGAACTTGGCTAATGAGCAATGCAGAGATAATTTTGTATGGAGTTTAATACAAACATGATTAATAAATTTTGATGTTAACATTTATTTTGGACATACTCTTTCAAATAAACTTCTTTTTTTTTTTTTTTTAAATTGTGTTTAATTTTTTTTAAATATGTGATCACATTTTTTATTTATATGTGTAACAAGGATATACTAGTAAATTAAACAGGTACAACTTAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01521	Fe-S_biosyn	Iron-sulphur cluster biosynthesis	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000361	Domain	FeS cluster biogenesis	Interproscan
IPR016092	Family	FeS cluster insertion protein	Interproscan
IPR017870	Conserved_site	FeS cluster insertion, C-terminal, conserved site	Interproscan
IPR035903	Homologous_superfamily	HesB-like domain superfamily	Interproscan
IPR050322	Family	Iron-sulfur cluster assembly and transfer HesB/IscA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10072	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0097428	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf119_6.38 global RNA-seq network