Gene detail

Detailed information of CsqKR_Scaf117_2.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf117_2.15	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	chr1	5120976	5130098	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf117_2.15

ATGGAAATGGGCTCGGAAATAAGTAGTAAGATTCGGTCAGCCATCAAAGCAAAGTTGGTGGAACTTGGTGCATATGTTGATGATGAACTACCTGACTACATAATGGTAATGGTTGCCAACAAGAAAAGTCACACTCAGATGTCAGAAGATCTGGCACTTTTTCTTGGACAAAATACAAAGAAATTCACCAGCTGGTTGAACAGTTTATTAATAAAATTACAATCTATATCTACTGAAAAAGAAGCACCTGATAGCAAGAAAAGGAAGAAGTCAGCAACAAAAAAGAAAGTTAAAAGAAGAAAAAGTTCTGAGAATGTTGCACCTACAACTTCTACACCAGTGTCTGAAAAGCAAGACAGAGATGATGGAGAGCCAAAAATGTCAGAAACTTTAGTGCTTGATGATGAACCAGAGCTGACAGTCCAGGCTGATACAGATGAATTCACTGAGGAAATGAAACAGTTTGAAGAGACATTCAAACCATCACAAGATTTTACAATGCCAGAGACTAAAGCTGTCAATAAGGCGCCCAGTGTAAAATATAAAGAAAGTCTTGATACAGTGGTCAAAGAAGAGCCAGAAGAACCAGTCCCAAAAAGTGCATCTGCTACCAAAGTGGTCTACAAGCAGCCATCAGGTGAAGTGGAGGTCAGTGCTGTCCTGTTAAATGAAAACAAAAAAACAGTTGATTCTCACTTAAAACCAGACAGACAAGATGTGGCTGTACCTGTGAAAAGGAACATTGTCACCTCAGCTTCTAGCCAGAAACAAACTTTTATTATCAAGCGTCATGATAAAGAAGGTGATGTCAACATGGTGTATGTTCAGCCAACTCCTGTTAGCTTGGGTAGCAGGACATTAACTCAGAATGTCACCACAGCCCCAGGTCGAACAGCCATAAAGCGAAAAGCTCTTCCCTCTTTGGTCGGAACAGTTATTCAGAAGCCAGAGGAGGTTGAAGAAGAATATGATCCATACAACCCTACTGTTGGAAATGTTGCCAGTGTTGTCAGAGTGACAGCTAGAAAATCCAGTGTGCCTCCTTCCATGCAGGCTAACAAATCTCTGCTGTTAAAGGCAATGACGGATGCTGAGAAATCAGTTCTCACTGCCAGATCCTCATCTGTTACAGAGACTGCTGCTAGGACAACGTCAAGTCCTGACGTTAGGACTACTACAAGTCAGGCCTATGTTATGCCAATGCGTCGGGAAGCTGTGACAGAGGTGTACAAGCCTACACAGTTGGAGCTCACATCTCGATCTCGTAAAGAAGAGATTATGAGGACCATGAAATACACTATCAGAAACCAAACTGAGGTTGGGAGTAATAAAGAGCCTGGCAAATTACCTGAGCTTAAAATAGACTACCGAGTTGTTGAGTGTGAACTTGGAGAGGATGTGGACTCCAGCCCAGAGCTGTTGGGAATTGATGAAAGAAATGTTGAGACACTTGTTGACATGAGTATTCCAGAGAGCACTGGAAATACTGTCACTAATAATGACTACAGTGAGAAGATTTCTGAAATAAACCAACGAGTTGTGGAAGATGGGCCAAGAATTATAGAAGAGAAACCAAAATTAGAAGTGGAGCCAGCATCTGTTACAAGTAACACACGGTTCATTGTCACACTGGATGGAGTTGACCCTGACCAGTATGATGAAAATGGACAAGAGGATCTGTTGTCAGATATTCGTAGAACTGAACACATCCAGGAAGTGTTGCCACAGGCAGGACAAAAAGTATCTCCACCAAAGGTTAAACCTTTCTCCATTAGCCTACAAGATTCAGACGAAGAAGATGATGAAGAGATGCCCACTAAAAGAAGTAAAATGGCAGAACGATGTAAATTCTGGCCAGCCTGTGTTAATGGCAATGCCTGTCAGTATCACCACCCCAGTATTCCGTGCAAGACATTCCCTAACTGTAAGTTTGGTGACAAATGTCTGTACATTCATCCTAACTGTATGTTTGATGCTCGCTGTACAAAACGCGACTGTCCATACACACACGCTAGTCGACGTACCATACACTCTTCTCCACCACAGGGTAAGATGTTTTTTGTTATAAACCATATTTCAAAATAA

Transcript

CsqKR_Scaf117_2.15

AAACACATCAAAAACATATTATGGTGGCCAAACGTCGTTGGTTCTGGTAAAAGTTGTTTTAACATGGTTTTGTAAAGTCAAAATTGCAAAATGGAAATGGGCTCGGAAATAAGTAGTAAGATTCGGTCAGCCATCAAAGCAAAGTTGGTGGAACTTGGTGCATATGTTGATGATGAACTACCTGACTACATAATGGTAATGGTTGCCAACAAGAAAAGTCACACTCAGATGTCAGAAGATCTGGCACTTTTTCTTGGACAAAATACAAAGAAATTCACCAGCTGGTTGAACAGTTTATTAATAAAATTACAATCTATATCTACTGAAAAAGAAGCACCTGATAGCAAGAAAAGGAAGAAGTCAGCAACAAAAAAGAAAGTTAAAAGAAGAAAAAGTTCTGAGAATGTTGCACCTACAACTTCTACACCAGTGTCTGAAAAGCAAGACAGAGATGATGGAGAGCCAAAAATGTCAGAAACTTTAGTGCTTGATGATGAACCAGAGCTGACAGTCCAGGCTGATACAGATGAATTCACTGAGGAAATGAAACAGTTTGAAGAGACATTCAAACCATCACAAGATTTTACAATGCCAGAGACTAAAGCTGTCAATAAGGCGCCCAGTGTAAAATATAAAGAAAGTCTTGATACAGTGGTCAAAGAAGAGCCAGAAGAACCAGTCCCAAAAAGTGCATCTGCTACCAAAGTGGTCTACAAGCAGCCATCAGGTGAAGTGGAGGTCAGTGCTGTCCTGTTAAATGAAAACAAAAAAACAGTTGATTCTCACTTAAAACCAGACAGACAAGATGTGGCTGTACCTGTGAAAAGGAACATTGTCACCTCAGCTTCTAGCCAGAAACAAACTTTTATTATCAAGCGTCATGATAAAGAAGGTGATGTCAACATGGTGTATGTTCAGCCAACTCCTGTTAGCTTGGGTAGCAGGACATTAACTCAGAATGTCACCACAGCCCCAGGTCGAACAGCCATAAAGCGAAAAGCTCTTCCCTCTTTGGTCGGAACAGTTATTCAGAAGCCAGAGGAGGTTGAAGAAGAATATGATCCATACAACCCTACTGTTGGAAATGTTGCCAGTGTTGTCAGAGTGACAGCTAGAAAATCCAGTGTGCCTCCTTCCATGCAGGCTAACAAATCTCTGCTGTTAAAGGCAATGACGGATGCTGAGAAATCAGTTCTCACTGCCAGATCCTCATCTGTTACAGAGACTGCTGCTAGGACAACGTCAAGTCCTGACGTTAGGACTACTACAAGTCAGGCCTATGTTATGCCAATGCGTCGGGAAGCTGTGACAGAGGTGTACAAGCCTACACAGTTGGAGCTCACATCTCGATCTCGTAAAGAAGAGATTATGAGGACCATGAAATACACTATCAGAAACCAAACTGAGGTTGGGAGTAATAAAGAGCCTGGCAAATTACCTGAGCTTAAAATAGACTACCGAGTTGTTGAGTGTGAACTTGGAGAGGATGTGGACTCCAGCCCAGAGCTGTTGGGAATTGATGAAAGAAATGTTGAGACACTTGTTGACATGAGTATTCCAGAGAGCACTGGAAATACTGTCACTAATAATGACTACAGTGAGAAGATTTCTGAAATAAACCAACGAGTTGTGGAAGATGGGCCAAGAATTATAGAAGAGAAACCAAAATTAGAAGTGGAGCCAGCATCTGTTACAAGTAACACACGGTTCATTGTCACACTGGATGGAGTTGACCCTGACCAGTATGATGAAAATGGACAAGAGGATCTGTTGTCAGATATTCGTAGAACTGAACACATCCAGGAAGTGTTGCCACAGGCAGGACAAAAAGTATCTCCACCAAAGGTTAAACCTTTCTCCATTAGCCTACAAGATTCAGACGAAGAAGATGATGAAGAGATGCCCACTAAAAGAAGTAAAATGGCAGAACGATGTAAATTCTGGCCAGCCTGTGTTAATGGCAATGCCTGTCAGTATCACCACCCCAGTATTCCGTGCAAGACATTCCCTAACTGTAAGTTTGGTGACAAATGTCTGTACATTCATCCTAACTGTATGTTTGATGCTCGCTGTACAAAACGCGACTGTCCATACACACACGCTAGTCGACGTACCATACACTCTTCTCCACCACAGGGTAAGATGTTTTTTGTTATAAACCATATTTCAAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480	PWI	PWI domain	Family	Interproscan
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR002483	Domain	PWI domain	Interproscan
IPR040366	Family	Nuclear polyadenylated RNA-binding protein Nab2/ZC3H14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14738	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008143	Molecular Function	poly(A) binding	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:1900364	Biological Process	obsolete negative regulation of mRNA polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf117_2.15 global RNA-seq network