| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf116_6.29 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER | chr10 | 14632919 | 14638884 | + |
| CDS | |||||
| CsqKR_Scaf116_6.29 | |||||
| Transcript |
| CsqKR_Scaf116_6.29 |
| Protein |
| CsqKR_Scaf116_6.29 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00753 | Lactamase_B | Metallo-beta-lactamase superfamily | Domain | Interproscan |
| PF07521 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF10996 | Beta-Casp | Beta-Casp domain | Domain | Interproscan |
| PF16661 | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001279 | Domain | Metallo-beta-lactamase | Interproscan |
| IPR011108 | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| IPR022712 | Domain | Beta-Casp domain | Interproscan |
| IPR036866 | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR041897 | Domain | Integrator complex subunit 11, MBL-fold | Interproscan |
| IPR050698 | Family | RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11203 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0004521 | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0016180 | Biological Process | snRNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf116_6.29 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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