Detailed information of CsqKR_Scaf113_16.59 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf113_16.59SERINE HYDROXYMETHYLTRANSFERASEchr1549886364993124+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00464SHMTSerine hydroxymethyltransferaseDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001085FamilySerine hydroxymethyltransferaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR019798Binding_siteSerine hydroxymethyltransferase, pyridoxal phosphate binding siteInterproscan
IPR039429DomainSerine hydroxymethyltransferase-like domainInterproscan
IPR049943FamilySerine hydroxymethyltransferase-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11680SERINE HYDROXYMETHYLTRANSFERASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000900Molecular FunctionmRNA regulatory element binding translation repressor activityInterproscan
GO:0004372Molecular Functionglycine hydroxymethyltransferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006565Biological ProcessL-serine catabolic processInterproscan
GO:0006730Biological Processone-carbon metabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0009113Biological Processpurine nucleobase biosynthetic processInterproscan
GO:0019264Biological Processglycine biosynthetic process from serineInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0035999Biological Processtetrahydrofolate interconversionInterproscan
GO:0042803Molecular Functionprotein homodimerization activityInterproscan
GO:0046653Biological Processtetrahydrofolate metabolic processInterproscan
GO:0046655Biological Processfolic acid metabolic processInterproscan
GO:0048027Molecular FunctionmRNA 5'-UTR bindingInterproscan
GO:0050897Molecular Functioncobalt ion bindingInterproscan
GO:0051289Biological Processprotein homotetramerizationInterproscan
GO:0070905Molecular Functionserine bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf113_16.59 global RNA-seq network
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