Gene detail

Detailed information of CsqKR_Scaf107_8.33 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf107_8.33	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	chr14	16306059	16315281	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf107_8.33

ATGAAAAAATTCTTGTTTCAGGGTTTGTTTCGGAAGATCCTCACAGGACAGATAAAACCAAACAAACTGATTCACATGACACATGATGATTTGGCTTCAAAGGAACTGGCACAGTGGCGCGAGAAAGAAACCAAACATACACTGGAGTTGATAGAGACAGCAGAGAAGAAAGCCCAGAAGGAGCCAGTGGTGATCAGAAAAAAAACTCACAAAGGCGAGATTGAACTGGATGAGGATCTCAGCTCATTAGCAGAGACTTTACTTGAAGAAAAACCGTCAGTTCCGAGCTCCACTGATGACACGAAAAAAGAAGACGGAAACGAAGGTGATGCTGATGAGAATGTTCCGGAAGTAATTGTTGACACAACAGATCAGCATCGAGCTCACTTGTTTGATTTGAACTGTAAAATCTGTACAGGCAAACAGGCTCCTGCACCTCAAGAACCAGAGACAAAGAAAATGAAAGTGGAGCACAAAGTCAAAGAAAGCAAGGAGGTGAAGAAAGAGAAGGAGAGTGCCAAGCAAGACCTGGAAGCTGAGACAGAGGAGATGATCAAGGAGGTGATGGATGTGATTCACAAAGAAGATGAAAAACCAAAACCTTCACAGTCACAACCAAGCAGCTCAAACGAGGCTGCAGTCATTGTCAGGTCTCCAGATTCAGCTTTGTCATCTGGTTTAGATTCGAAGCCAAAGTTCAAACCTCAAGGACCGAGACTGTGGAAAGGTTTTATTGCCATGCAGGATCTCGCCAAGTTTTTCACCTCAGCTTACAAAGTCTCTGGACCAACAAATGATTTGAATCTTCCTGACACAGTTGCTGTATGTGGACGCATAGCCCCTGACCAGATGTGGGATTACTTGGCAAAAATAAGACAAGGAGGTTCGAGGGATATTTGTATCATCCGATTTATTCCTGGGAGTGATGATGAGAAAGTGGCATACATTCATCTGTATTCGTACCTGAACAGCAGAGGTCGCTGTGGTTTAGAAGACAACAGACCACACATGCTATTGGGTATTATCATTCGTCAGAAGCTGAAGAGAGCTAGTCAGAGTGAGGCCAGTGTTTTACCAAAGCTGAAAGAAGAAGCTTCAACAGCTAAAAAAGCCAAAGTCCAGACCTCTGTGTTACCACCAAAAGATCCGAGACTAGATCCAAGATCCAATCTTTCATTGCCATATTCTCCTGGAGGTGGTGTCGAAGATGATGATGATGATGATGATCCACCTTATGATCCAGGAGACCACAAAATCTTAGCAATGTCATCACAACCTGCAGTTACATCAACTTCAGTTTCTTCAGGGACATCATCATCATTGACAACATCAACAGTTACACAGAGCATGAAGCAACTGTCATCACCATCAACAAAAAAGAAGCTGAAACAATTGGATGATACTGAAGCCATAACCGGTATCAAAGTTGATGAAATTGTCGACAAGATCGCAAAAAGTACAGATCCAGCACAGATTACTGCAATGATGGTGACTATTCTAGCATGTGCGACAGATGCTACAGAGCAGAAGGTTCTGCTTACAGAGCTCACAAACAGAGTAGAGAAACGGAAACAGGACCTGATAAAACAGACACTGGGAATAGAAGCAAAATTTTCTGTGGAAAATAAACTGAAAGTTGGTGAAAAAGAAAAGTCAGAGACCAAGTCAGATGTGGAAAAACCTTCAACTGAAATAAAAACTGTTTCTTTTTCACTGCCTAAAGCAGGAAAGTCTGACCCAACCAAATTTGGAGAGTTGGAGAGATATAGGCCTATTCATTCTGAAATGACCACTCCTGTAGGGTTTTATAAAAATAACAGTGCAGAACCTAGCACAAGTCATTTCAGAAGCACTAGCCCAAAGAAATCAATTGAGATTGTCAAGAAACATATTAGAGAAGACGCTGGACATAAATCTGAAAAAGCCAAAGAATCTGTTGAAAGTAAAGTAGTAACAACTGAGGCCACAACATCTAGTTCAGATGTTGTTGAAGCAGATGCTAAACAATCTTCTGCAAACATTCAGTCATCAGAAACAGCGACAGTGAAAAACAACGAGATGGCCACAACAAGTGAATCTTCAGCTAAAAGTATTCCTATATCTATCTCTGAAACGAAAACTGGTGACATGCCACTGGCTTTGCAGGCCCTGATGAAAGATGTTATGGGAGAATCGTCAGTAAGACTTCAGAAGCCAAGACTTCCAGCTCGCTTTGCTGTGTCCGACAAAGGAAAAGATTCCCAAGGCAGCAGAGAGGAAAATACAGATGAAAATAAAGCATCAAACAGTCAGAAGGAAAATGAATTGAAACTGTTTGGTGATCCTGAAAGAAAAGATAAGAAAGCTGACATACAGAATCTTATCCCTGGATTGGGTTACCTCGATACAGACAGCGATGATGATTATTCAGGCAGTCCTCACCTGTTCATGAAACTTGTCAAGAACAGTACTGATGGAGACAGTTCTGTCAGTGCAAAGGAAAAGTCAGTAGATGACTCCAAAAAAGATGAGGTGAATAAAAAGTCAAAAGATAAGCAGATAGAACTTTCAAAAAGTGATCTTGATATGCGATCAGGCCAAGTTCCCGACGTGACAAAATCTGTTCCAGAAGATGTAGATCTGCGCACACAACAGACTATTGAAGACATTGATGAACGCATTAAGCTGAGTTCTTCTCTTCCACTGGATAAAGATGATCGCTTACGAGGACCACAGCCGATGGTTAATTCTCCAACTTCGGTAGGTCCACCAGGTGTTCGACCACCCGCACCTGAAGCTTATTCATCAACAGCGGTTCGACCACCTCCAATCAGAATACCTCACTGGGGTCCAGGAAACCCCCCTCCTCCAGGAGTAGATGACCCCATTACACCAGAAACAAAAATCAGACCACCACCTGGTGTAGCTTTAAGATTTCAAGGAATACCTCCACCTCCTCCTCCCCCATTTGCAGCACCCCTGCTTCCACCTCGTCTTGGATTCCCTGCTGATGCTTCTGTTGAAAGCATTCCCGCACCACCACCAGACGAACCTTCAGAAGCAACTACAGAGGAGTCTAAGAAGGACATGCCTGAAGCAAAGGAAGACACTCCTAAAGATTCTTCTAAAACAGGATCACCTGAAGAAAAGAAAGAGGATATCAGTTCAAAGAAGGTTAAAAAGGATAAAGGCAAAGATAGAAACAAAAACAAAAATAAGACAAAAAAAATTCAGAAGAGAAGCCAGGTACTGAAGATGTTGACGAGAGGATTCTGCCACCTATAA

Transcript

CsqKR_Scaf107_8.33

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07500	TFIIS_M	Transcription factor S-II (TFIIS), central domain	Domain	Interproscan
PF07744	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003618	Domain	Transcription elongation factor S-II, central domain	Interproscan
IPR012921	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006351	Biological Process	DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf107_8.33 global RNA-seq network