Gene detail

Detailed information of CsqKR_Scaf107_1.27 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf107_1.27	NYD-SP28 PROTEIN	chr14	15573421	15585908	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf107_1.27

ATGAGTTCAAGCGGTGAAGAAGAAGAAATGAAAAATGACCCAGAATCTCGTATCGCCTTTCGCCGAAAGCGAATTCAAAAACGCATTGAAGCCGCTGCAAGGGCTGCTCTGGGAGAAGATCTTAATGAGCAGAAGGACATGAAAGAGGAACTCACTAAGAGTAGAAAACAGATAGAAGAGAGCAGACTGCGACTTGCCAAGCTGGGTCGAGATGGTTTTGAACTCGTTACAAATATCCGTGTTGCTGGGGACGCCAGAGAAGCAAATCGAAGAGAAGAAGAAGATGAAGCTAAACGACTCAGGAAAGAAAGACTGGAACAAGAAACAAAATCAGGATCAGAGAAATTTGAAGAAATCACTAAGAAGTGGGAGTCAGCTCTACAGAAGGAAGTTCCACAGTCCCTCCACGATGAACTGAAAACAAAAGATGACCAGTACGTGAAGGATCTGAAGAAAATGGCAGAAGACATTGATTTGATGATAGAGAGGATGGAGGAGCAAATAAAAGACCTCAACAAAGCCTACAGGGAGGAGCTACAAGAAATAGAAAGAGCGTTTGTGGCAGAGAGAAATGAGTTACTGGAAGAGAAGAAAGGATCGTGGGAGGACATGATGCTGAAACGAAAGAACAAAGAGGAGGAGTACATGATGGGGCGGGAGGCCAGCGTAGAGGAGTATGAGCAGCAGCTACAGCACCTTCGTGTCCACGATGCAGAGGAATACAACATTGTTAAAATCAGACTGGAAACAGACGTACAGATTCTGGAGCAGCAGTTGCAGCAGATGAGGGCGACGTATCAGCTGAACCAGGAGAAACTGGAGTACAACTTCCAGGTTCTCAAGAAGAGAGACGACGAAAACACCATCACCAAGTCACAGCAGAAACGAAAAATCACAAGATTGCAAGATGTTCTAAACAATCTGAGAATAAAACTGGCTAAACAAGAAAAACAGTACAGGGATGAAAATACTCAGCTAACAGAAGACTACAAACGTATCACTGAACAGTTTCACGATCTGCAGAGAAAGTCAAAGCATTTCATGAACACAGATGCTAAGAAGTTTCATGATGTGTGGATCATGAATGAGGAGGAGTGTAAGGGCCTGGTGTCTGAGATACTTGATGCTGACAGGACCATTCATGAACAGCAGCTCGGACTGCAGTGGGAAAGTCCTGACTTGGCGTTTATAGAAAATGTCGGACCTCTGTCAAAAGATGATGGAAAAGGGCGAGGTTTGTCTGCCAATGAAGTCGCCCAGGAAGTAATGGGATCAGATTATGGACCTCCAGTTCTGGCTGAGGAGAATGTAGGCGTTGATGAACCAGACAAGGAGTGTGCAAAGGAAGTTGACGAAAGTGAGAGCAGACAAACAAGTATTTTCACAAAAATCTCTGCCAAAACCATCAAACAGATCCTTGAGTTGCTGTGTGACGAATCGGGTTTCTTGGTTGAAGCTAAACTTAATAAACTATTGGCCCCACTTGAAAAGGATGAACAGTCACTAATGAAGCTGGATGCAATTTTCACAAAAGATGAGGGTACTGAAAAAATTGTTGAAGAACATCTTTCTGCTGAGGAAGGTTATGATGAACTGGATGAAGAGGTTCAGCAGCTCACTACAAAGGAAGAGAAAGCACCTGAGGGTGAAAAAATTGAGGGTGACAAAACTGAGGGTGACAAAATTGAGCTGATTCACCCAAACCAGGTTCTGAAAGCTCTCAGAGCTTTTGTGTTCGACCACAGAAAACCAGCAAAAGAGAAGGGAGGTAAATCTCAGTTTAAGATCACTAAGCTGGAGGAGAGAGACGACTCCATGGATTCTGATTACTGGCAGAAATACGCCAGTGTGCTGTCGGAAAAGAAAGAAAAAGTCTGGGATGCTCTGGTTGCAGGACTTGAAAAATACTATGAGGTTTTGTCAAGTCGTTCCAAGTTGATCACAGAGACAGATGCCCTTACTCAGCAGAATGCAGAACTGAAAATGTTGTTACATCAGTACGTCAACTCCAAGGTGAATTCGGAACTGGAAATTCCACCAACTCGAGTACTTCAAATGGAAATGAACCCTCCACAGTAA

Transcript

CsqKR_Scaf107_1.27

GTGACATATTCCGGCCTAGCAACATACGATCAGTTATTATTATTTTTCACGATAAATTTGTATTACTTGTTGATTTTTATAATTTTACAAAAATGAGTTCAAGCGGTGAAGAAGAAGAAATGAAAAATGACCCAGAATCTCGTATCGCCTTTCGCCGAAAGCGAATTCAAAAACGCATTGAAGCCGCTGCAAGGGCTGCTCTGGGAGAAGATCTTAATGAGCAGAAGGACATGAAAGAGGAACTCACTAAGAGTAGAAAACAGATAGAAGAGAGCAGACTGCGACTTGCCAAGCTGGGTCGAGATGGTTTTGAACTCGTTACAAATATCCGTGTTGCTGGGGACGCCAGAGAAGCAAATCGAAGAGAAGAAGAAGATGAAGCTAAACGACTCAGGAAAGAAAGACTGGAACAAGAAACAAAATCAGGATCAGAGAAATTTGAAGAAATCACTAAGAAGTGGGAGTCAGCTCTACAGAAGGAAGTTCCACAGTCCCTCCACGATGAACTGAAAACAAAAGATGACCAGTACGTGAAGGATCTGAAGAAAATGGCAGAAGACATTGATTTGATGATAGAGAGGATGGAGGAGCAAATAAAAGACCTCAACAAAGCCTACAGGGAGGAGCTACAAGAAATAGAAAGAGCGTTTGTGGCAGAGAGAAATGAGTTACTGGAAGAGAAGAAAGGATCGTGGGAGGACATGATGCTGAAACGAAAGAACAAAGAGGAGGAGTACATGATGGGGCGGGAGGCCAGCGTAGAGGAGTATGAGCAGCAGCTACAGCACCTTCGTGTCCACGATGCAGAGGAATACAACATTGTTAAAATCAGACTGGAAACAGACGTACAGATTCTGGAGCAGCAGTTGCAGCAGATGAGGGCGACGTATCAGCTGAACCAGGAGAAACTGGAGTACAACTTCCAGGTTCTCAAGAAGAGAGACGACGAAAACACCATCACCAAGTCACAGCAGAAACGAAAAATCACAAGATTGCAAGATGTTCTAAACAATCTGAGAATAAAACTGGCTAAACAAGAAAAACAGTACAGGGATGAAAATACTCAGCTAACAGAAGACTACAAACGTATCACTGAACAGTTTCACGATCTGCAGAGAAAGTCAAAGCATTTCATGAACACAGATGCTAAGAAGTTTCATGATGTGTGGATCATGAATGAGGAGGAGTGTAAGGGCCTGGTGTCTGAGATACTTGATGCTGACAGGACCATTCATGAACAGCAGCTCGGACTGCAGTGGGAAAGTCCTGACTTGGCGTTTATAGAAAATGTCGGACCTCTGTCAAAAGATGATGGAAAAGGGCGAGGTTTGTCTGCCAATGAAGTCGCCCAGGAAGTAATGGGATCAGATTATGGACCTCCAGTTCTGGCTGAGGAGAATGTAGGCGTTGATGAACCAGACAAGGAGTGTGCAAAGGAAGTTGACGAAAGTGAGAGCAGACAAACAAGTATTTTCACAAAAATCTCTGCCAAAACCATCAAACAGATCCTTGAGTTGCTGTGTGACGAATCGGGTTTCTTGGTTGAAGCTAAACTTAATAAACTATTGGCCCCACTTGAAAAGGATGAACAGTCACTAATGAAGCTGGATGCAATTTTCACAAAAGATGAGGGTACTGAAAAAATTGTTGAAGAACATCTTTCTGCTGAGGAAGGTTATGATGAACTGGATGAAGAGGTTCAGCAGCTCACTACAAAGGAAGAGAAAGCACCTGAGGGTGAAAAAATTGAGGGTGACAAAACTGAGGGTGACAAAATTGAGCTGATTCACCCAAACCAGGTTCTGAAAGCTCTCAGAGCTTTTGTGTTCGACCACAGAAAACCAGCAAAAGAGAAGGGAGGTAAATCTCAGTTTAAGATCACTAAGCTGGAGGAGAGAGACGACTCCATGGATTCTGATTACTGGCAGAAATACGCCAGTGTGCTGTCGGAAAAGAAAGAAAAAGTCTGGGATGCTCTGGTTGCAGGACTTGAAAAATACTATGAGGTTTTGTCAAGTCGTTCCAAGTTGATCACAGAGACAGATGCCCTTACTCAGCAGAATGCAGAACTGAAAATGTTGTTACATCAGTACGTCAACTCCAAGGTGAATTCGGAACTGGAAATTCCACCAACTCGAGTACTTCAAATGGAAATGAACCCTCCACAGTAACAAATTCAGCAAAACTCTAAAACTGAACAAAACTGTTTATATACATTTTAATCCAGCATGAAAAGAGCAAAATAGGGTTTTATTTGGAGAATTTTTTTTTATTTATTAACTTGAAACATAGTATAATTTGTTTACTTGAAAAAGAATTATAATTTATTTATTTTGTGATATATACCAACAGAAGAAATAAAAAGATTTAAAAACATATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14772	NYD-SP28	Sperm tail	Family	Interproscan
PF14775	NYD-SP28_assoc	Sperm tail C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029440	Domain	Dynein regulatory complex protein 1, C-terminal	Interproscan
IPR039505	Domain	Dynein regulatory complex protein 1/2, N-terminal	Interproscan
IPR039750	Family	Dynein regulatory complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21625	NYD-SP28 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003352	Biological Process	regulation of cilium movement	Interproscan
GO:0005858	Cellular Component	axonemal dynein complex	Interproscan
GO:0005930	Cellular Component	axoneme	Interproscan
GO:0060285	Biological Process	cilium-dependent cell motility	Interproscan
GO:0070286	Biological Process	axonemal dynein complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf107_1.27 global RNA-seq network