Detailed information of CsqKR_Scaf103_5.29 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf103_5.29DNA LIGASE 4chr62956578829577450+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF11411DNA_ligase_IVDNA ligase IVFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR001357DomainBRCT domainInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR021536DomainDNA ligase IV domainInterproscan
IPR029710FamilyDNA ligase 4Interproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR044125DomainDNA Ligase 4, adenylation domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf103_5.29 global RNA-seq network
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