Gene detail

Detailed information of CsqKR_Scaf103_41.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_41.15	METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN	chr6	33122368	33131416	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf103_41.15

GAGGTTTGTAACCTGGTTTATAATTTTTTTATGGAATCTCCTTCAAAACTTAGAATCTTAGTATCTACTGATATCTGTAATGGAGAATTTTAATATGTAGGACTCCATCCTATATATAACTAAAGTATTGTTTGTTTATATATTTAGTGTGATCCTAATTTCGACGATTTTTTACAGGGATTTCGCGGGAAAGATTTGACATTCCGGTTACCTGATTACCTATCGGTAAATATGAAACGGATCACTCTAATGCTTTTCGTATGTTATTCTTTCAGAAATTAAATTATATATTTTTTATATTTTACAGCACAATGGAAGCGAATCTAGCAGTCCAGATACTGACCGAGATTTTGATCCTTCAGCAGAGATGCTCATTCATGACTATGACGATGAGCAAACCATGGAGGAAGAAGAAGCCATGAGTGGAGACAGTTGTTCTGGAGAACTAGATGATCTAACAAAGTAAGGGGACATGCCATTAGAACAACTTCTGACCATGTATGGATATGGAGCTGAAGGGTACAGCGTTTCGCAACCTGATGATAATCAAGACAGCACACGGTCAAGCAGTGAGGAGGAAATACTGGAAAACCAAGATCTCACTCTAGACAAGGATGAGATAGCTCGGGATCTGTTGATTAACAACAGTGAGGCAGATAACAAGGAAACATCAGTAGTGGATTTGTTTGAAAGTGTGGCTACCTCTCACACTGTTCGACTTCTCAGGTCAAGCAGTCGTCCTGGGAGTTCTGATGAATCAGATTCTGATGACGCTGATTACAATCCTGTACATGATGAAGACTGGAAAAAGGTAATTCAAGTAGGCCATGATTACCAAGCAGTTGTTCCTGAAGGTCTTTCTAAATATGGTGATGCTCCAGCTTATGAAAATGAAGACAGATTGCTTTGGAATCCAACAAAACAGACAATTCAACTGTTGAAAAATACCTGAAGGATGTTCATAAACAAAATCTGCAGAATAGTCAGGGTGTTAATTCCATTCCGACTGGTGCTCATGTTGCAGATGATGAACAGGCTCTGTATTTACTGTTGCAATGTGGTCATAATGTAGAAGAGGCACTAAGGAGAAGAAATATGCAAGCAGTTCCAACATCAGATCCAATGAGTTTGTGGTCAGAAGAAGAATGCAGAAACTTTGAAAATGGCCTTCGACTTTATGGAAAGAACTTTTATCTTGTACAACAGTTTAAGGTGCGAACTCGGTCAGTGGGAGAATTGGTTCAGTTTTATTACTTGTGGAAGAAAACAGAAAGACACGATGTGTTCGCAAATAAAAACAGACTGGAAAAAAGAAAATATGCATTGCATCCAGGTGTTACTGACTATATGGACAGATTTCTAGATGATGCAGATCCATCTAATCCTCCACGTGATAGATCTTCAAGTCCAAACTTAAACTCATTGATTTATGGTGATCCTAAGAGAGCTCATGTGAAACAAGAACAAGAGGAAAGGGCAGCTTTTTGCAGTATACGTCAAGCAGAGGCTGATGCAGCTGCAGCTGCTACAACAGTCACAACCACAACAACAACTACTACTACTTCTAGTACAACATCAACCAAGAATGTTAAAAGTGATAGCAATAGTGAGCCTAGTCCTAAAGAGCCTGTGCCTAGTGACATTAATGTGAATGGAACAAAAGACCCTTACTGCCCAGTTTCAAAGAAGTTAAAGACTGAAGGTGCAGCTGTTTCATTATCAAAACCTAATGATACCTGTATACATGTGAATCATCGAGACAGTTTACCTAATATTCTGAGTGCAGGCGACAGTCACTTTAATGTAAGTTCTCAGGACATTAACAGTCAAGAAGTGCCAGTTATTGGTCAGTCTGAACCTATTGCTCAGTAGTCACAACTCATTCCATGCAGGTTTAACAATCATCAAAATGTGCAATAATATTTGGACCAAAGAGTTAAAAGTTAGCATCTTGCACAGTTAGTATATTGTTTTAGTTCTGCACGCATCCCTGCTGCTTCCATTAGGACTGGACAAAACGAAAAAGAAATGAGTACTGCTTTCCTGAAGTTTATGCCTGTTTTGGGTTTTTTTTGATGCTGTGCAGTCAGTAATTTGTGAGGAATTCATGTTGTGCTATGGTTCGTTATAAGTTCATTTAAAAGTTTTGAGATTTTGAAAAATATAGAATGACATAATGTGCTATAAAAATAGGTTTGTTTTTGGGTTTTTTTTTTTTTGTTAAATTTAATTGTTATTTTCCAATATAATAAAATACTGATTAAAGTTAACCTGTAAATTAAAGAAACAAAATTAAATAAAATTAAAATTTGAAACAGAATTGACATTTTGAATTATTATTTATTTAATTTTTAAACTATTTGATCCCATTTGGATTTTTATTGGTCATGTTTCTAAATCAAAATATGTTAAAAATGATATATATTTTAAAAGTTTTCTATAATAAAAGTTATTTTTTATTGTCAGTTAATTATGTATTGTTATGGTGATAATTGTTTATTACTATTCACAGTTATTTTAGGATATCTGTTACTTTGTTTTGGACTAAGGGTAAATTTTAATCTGACCTTAAACATTTCAAAACCTATAAATAAATGATTAATTTGTAGTAAGAAACTGTACTGTCTCTTAACGTTAACAGTATAATAAAACAAACCTATATCTCCTTTTATGACAGTGTGCTGGTTGCAACTGAAGTGAGTTTTTTTTGATATATCAAGCATTCTCAATGCATTGTGTATGGATGTTACTTTTTACAAACAAAATTATAGCTATACTGAGATGAAAAGGCGTTCTACATTTAACAGACAAAATGTTCATTGACGATATTTTGAGGGTTGTCCTCACAGATTTAGTGGATTGGATTCAGAAATGTAGTGGAAATAGAAAAATATATTTCCTAATGTTGATGTATTTGTTAGTTATAACCTGAATATTGATAAAAAAAAGAAAACGATTCAGTTAAGATAGTGTTAATTAAACAGCAGTGTCTTTGTTGATAAAGTACCATGTTAATTAGTATGTTGTTACTTGATAACCATTTAATTGCTGTTTATTGTTAGTAAAACAATGTGCAATAATGAAGATGCCTTACAGTTCAATAGTATTATGACTTTGAAATTAGATTGAAAAATTTGTAGTTTTATGTATTTTCTGTGAATTTGCTTGAGCATAATATTAATAAGAGTTAAATATTTGCATTTAGATCTGAATTTTCATTTACTGTTACAGTAAACTGGTTATTTCCCTTAAACTATTTTTTTTTTAAAAATAGAAAATAATTGATTCATTTTTATTATTATTGTTTTTAAATTTGTTTTAACTTTACATGAATCTATATTTGTATTATAGAAGTGTATCTACTTTGAAAAAATATTTATTTATTTATTTATATTTTTATTATTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19426	MIER1_3_C	Mesoderm induction early response protein 1/3 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR040138	Family	Mesoderm induction early response protein/metastasis-associated protein	Interproscan
IPR045787	Domain	Mesoderm induction early response protein 1/3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10865	METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0016575	Biological Process	obsolete histone deacetylation	Interproscan
GO:0042826	Molecular Function	histone deacetylase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_41.15 global RNA-seq network