Gene detail

Detailed information of CsqKR_Scaf103_31.4 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_31.4	IMPORTIN-7, 8, 11	chr6	32176678	32186988	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_31.4

ATGGAAGTAACCGAAGGCAATCTCCAAGCTCTGGCAGGATATTTGCAGCAAACGCTTTCTGCAGAAAAAGAAGTTCGAAAACAAGCTGAAAAATTTCTTGAATCTGTGGAAAGAAACAAAAACTATCCAATTTTATTGTTACACTTAATGGACAAAGCGGAGGTAGATCAACATGTTCGAGTCAGTGCTGCCATTACCTTTAAAAATTACATCAAACGCAACTGGAGAATGGAAGATGTAGATGACAAAATTCACCCTGATGATCGTACAGCTATCAAACAGCACATTGTTGGACTAATGCTTAAAAGTCCAGAACAGATTCAGAAACAGCTTAGTGATGCCATCAGTATAATAGGAAGAGAAGATTTCCCTGACAAATGGCCTAACCTGATAACAGAAATGGTTGCTAAATTTCAAACTGGTGATTTTCATGTAATAAATGGTGTCCTCAGAACTGCACATTCTATTTTCAAGAGGTATCGACATGAATTTAAATCCCAGCAGCTCTGGACAGAAATTAAATTTGTTTTAGAGAACTTTGCAGCACCTCTGACAGAATTGTTCAATGCAACAATGGAACTTGGAAAAACGCATTCTTCAGATCCTGAGGCTCTGAGAGTAATCTTTAGTTCACTGCTTCTCATCTGCAAGATATTTTACAGTCTTAACTTTCAGGATCTGCCAGAACACTTTGAAGATAACATGACAATATGGATGAATCATTTTCTAACACTACTCAATGTAGATCACAAATTGCTGAAAACAGATGATGAAGAAGAGGCTGGACTCCTAGAGCAGGTGCGATCCCAGGTGTGTGATAATGTTGCTTTGTATGCCCAGAAATATGACGAAGAGTTTTCTCCCCACCTGCCACAGTTTGTAACAGCAATTTGGGGTTTATTAACAAGCACTGGACAGCAAGTGAAATATGATATATTGGTGAGCAATGCCATCCAGTTTTTGGCCTCAGTGGCTGAAAGACCATCATATAAAAGCTTATTTGAAGATCCTACAATTCTTGCTAGTATTTGTGAGAAAGTTATTGTGCCAAATATACAACTCAGAGCCACTGATGAAGAATTGTTTGAGGACAACCCAGAAGAATACATTAGACGTGATATTGAAGGCTCAGATGTTGACACTCGAAGACGAGCAGCATGTGATCTTGTTCAGGCTCTGTGCAAAATGTTTGAAGGACCAGTGATACAGAATTTTTCAACATATGTTCAAGGCCTTTTAGAAGAATATTCTAAAAATCCCACTGCCAGTTGGAAAAGTAAAGATGCTGCTATTTACTTAGTTACTTCACTAGCAGCTAAAGCACAAACACAAAAGCAAGGAGTAACCCAGACCAGCAGCTTGGTCAACATATCTGACTTCTATCAGGCACAGATTCTTCCAGATATTCAGTCTCCTAACATAAATGAGTTTCCAGTTCTGAAAGCTGATGCTATCAAATATTTAATGGTTTTCAGAAGCCAGCTGCCTAGAGAAGTCCTGATTTCAAGCCTGCCATATTTAATAAAACATTTAAAAAGTAATAGTGTAGTTGTGCACACCTATTCAGCCCATACACTTGAAAGACTGTTCATGGTCAGGCAGCCAGGAGGGCAGTCTGCAATAACAACAGCTGATGTCAAAGATCTTGCTGCAGACCTTATGTCCAGTTTGTTTTCTGCCATGGAATTGCCTGGATCAACTGAAAATGAATATTTAATGAAAGCTATCATGCGGACAATGTCTTTATTGAATGAAAATATTATCCCTATGGTTCCTGATCTCCTGAAAAGTCTCACTGCAAAACTTGTTCTGGTTAGCAAGAATCCCAGCAAACCTCATTTTAATCACTATTTGTTTGAGTGCTTCTGCATTGCCATTCGTACATCTTGCAAACATGACCCATCTGCTGTGAAGATGTTTGAAGATTCTCTGTTTCCTCCCTTCACCGATATTCTACAGCAAGATGTTCAAGAGTTCATGCCATATGTATTTCAAATGCTGTCTCTATTGATTGAGCTGCATACTGGTTGTATTCCTGAAACTTACATAGCTTTGTTTCCTCACCTGCTTGCACCTGTTTTGTGGGAGAGACCAGGTAACATTCCACCTCTCGTCAGACTGCTGCAGGCTTTCATAGAGAAAGGCTCTCGACAGATAGAACCAGACAGATTAAATGGTTTGCTTGGCATATTTCAAAAATTGATTGCATCAAAAACAAATGACCATGAGGGATTCTATTTGCTAAATGCCATTATTGAATTTATGCCAGTTGATCTTGTTAACCAGTACATAAAACAGATCTTTATATTGCTGTTTCAAAGACTTTCCAGTTCTAAAACAACAAAATTTATTAAAAGTCTGTTAGTATTTTTCAGTCTGTATGCTGTCAAATTTGGTGGCCAGAGACTTGTGGACATGGTGGATTCCATTCAACCTAAGATGTTTGGCATGGTGGTTGAGAAGCTATATCTCCAAGATCTTCAGAAGATTTCTGGTCACACAGAAAAGAAAATTTGTGCAGTTGGAGTTACCAAAGTACTTACAGAAGTTCCATCTATGTTACAAGGAGAATATGCAGCCTTATGGCCTCAGTTGTTACAAGCTCTCATCAGCCTATTTGAGCTGCCTGAGGATGTCTCTGTACCAGATGATGAACATTTTATTGAAGTTGATGATATATCAGGTTATCAAACTACATATTCGCAGTTAGCTTTTGCTGGAAAGAAAGAACATGACCCTCTTTGTGGAACAGTGCCTGATGTGAAAATGAATCTGGTCAAACATCTATATGAATTATCCTCACGTAATCCTGGCATGGTTAGTTATTTCAATATTTATCACTTTTAA

Transcript

CsqKR_Scaf103_31.4

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03378	CAS_CSE1	CAS/CSE protein, C-terminus	Repeat	Interproscan
PF03810	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08506	Cse1	Cse1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494	Domain	Importin-beta, N-terminal domain	Interproscan
IPR005043	Domain	Exportin-2, C-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013713	Domain	Exportin-2, central domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10997	IMPORTIN-7, 8, 11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005049	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005635	Cellular Component	nuclear envelope	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006611	Biological Process	protein export from nucleus	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_31.4 global RNA-seq network