Gene detail

Detailed information of CsqKR_Scaf103_28.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_28.13	S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED	chr6	31788396	31798778	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_28.13

ATGTGCTACCAGTGGAGTCACATCGCGGAGGTGGAGTTACTGCATAGTGGTGTTGGTCTAGAAGAGTCACAGAAAATTCACTGTCAGTGTACTAGAGCTTTTATTCGAGATTATGATCTGTGCAAACTTGGGCTGGTGGATGAAAATGAAGTTCTAACTAATGACTCAGACCTTTCACAAGAAGACTGTCTTGACGATAATGAAGTTGTAGATGAAGATATCATCTTAATGCAACAGATGGGTCTTCCAATTAGCTTTAGAGGAAGTAAAAAATGCATTGATGGAGACAAAAAAATGGACTATTCCAAGAGCAGCAATTCAAAAAGCAAAAAGAAAAAACGAAAAACTGACAAAAGAAGACGTAAAACAGATAATTATGAGTGTACTGAAGAGAAGACTGAAGAGATGGAAACAATACCTGAACATTATTATAGTGAAATTGTTGAATTGTTAAAACACCAGTCAAAAGATTGTGAAATGTCTAGCTGTGTCTCAGATATATATGATCATTCTGGTCAGAATAATTATGAAGCAGAAAAACATCCAGATATGACCTGTTTGACTACAGAGGTTCCTGATGTTGAAACAGCTTGGAAGGAGTTTTGGGGAAAGTATGGGGAGATGGTGGTGTGGCAGGCTTGGGTAGCAAAATACCCAGACCATGTAGATTATGATAAACTGACAGTAATTCCTTCTGCAGTAGAAGTGGAAATAAGTACTGAGATTGAAACAGGAAAGATTACCATAAATATGAATTCAGATGATGATGAAAATGATGATGAACACAAAGCAGGATCTCTTTGTGTTGCCATGGATACTAAAAACAATTCTCTCTTTGGAAATAATGAGATATCCCCTTCCATTGAAAGGTTATCTGTTGATTTCCATAATGAGAAAAATGATAGTTTAAATGAAGACATCAAAAAAGGTCCTAGTCAGATTATCTCTGAAAATAGTTGTGACATAGCAGAAGGTTTGAATTCCATGTGTACAAATGAAAATAATACACTGGCAAATCTGTGTACACTGGATGAGAAAACTACACCAGTTAGTGCATCTCTGCAGCTGAAATCTAGTGATAACCTGGCTGTTTTCAACCAAGCAATTGAATCGACCATGAGGAATCGCACAGAACAACTTATCCCCGCAGTAAACTCCTCTAATCTTGCATCATCTCTCGATCCAGCCACAGAGAACAACAGAATTAATGAAAATGCAGAACTTGTCCATATGATGCATAGTTATGCAGGATTTGATGCCAGAGACAACCAAGAAGATAGAGAAAATAATAAAATAACTGATCATGAAGCAGGAGTTGATTCTAGCTACAGCCAGGAAGATACAGATGATAACAAAATGACTGACCAAGTTTCAGAAGACACTGAACATATACAGGATTATAATGTAATGTGGCAGGAGTTGTGGGATGAACATTACACAGAGACGTACTGGTATCACTTTAACAGATTTACAACTTGGTTTAACCAGAGTTTGGCAAGTTACATGGCTTATCAGGTCAATCCAGCTAATCCAGTCACTTGTCTAAAATCCAATATTAATAAAGATAGTTGTACTTTGAATGGCAAAATGGACGCAGCTGAAACTGATCATGTTATTACTGGTGAAATATTGGACAGAAATAATTGCAATATAAACTGTGATGGTGATACATATACAAATAATCAGGATAACTGCAAAGAATTGGTCAGAAATGAAAATGATAGTAAATTATCTGATGAAATAAAAAACCAGCAGAATACTTGTGAAGTGAAAACTGAGGGTATCAGTAATCTTGGAATACGTAACTATGGAACTGATAAAACAGAAAAAAGTAATTCATGTGAAGGAGATACTAAAGTTAATATTAATAATCAGCCAGATGTTTTCAGCAAAAATTTTCTTGTAGCACAGTCCAAGGCTGACTTTGTTAATAATGTGCACAGTGACAATAATGCTGAACTGGATAATGCAAGTTTAATTCAGAACAGATTTTCTCATTTAGACATATGTACACAATTCAGAGAGTGTCAGAGTGCTGAGACAGAAATCTCAAATGATGATATTAAAAATTGTTTGAAAAGTGATGAACAATTTCAGGGAAATTTCCTAAGTGTGGAAAAGAATCAATCATGTGATGAAAATTTAGAACCTACTGACGGCAGGTCTGATAGGCAAAAACATAAGAAAAATTCCAATCAAGAAATTAAAAAACAAGATTCTAATAAATCACAGAATATAGGACAACAGAGTAGCAGTGGTGTACAGAGTTCAAGGATACCTCCAGGAGGTGAGGGAGGTGATGATGACCCACCAGATGAAATACCAATTAAACTTTCAAGAAGCCATGAAATTGATGATAATTATGAAGATGATGACACAAAAAGAAAGAAGAAAAACATTCGAGAAGCACTTAAGTCATTTGGCTTCAAATTAACCCATACTGTTGCAGGGCAAGAGCCTTTTTGTCATAAAATCAGAAGTGGAAAAATAATTTACAAGAATCCCAGAATCAAGGAACAGACATCTCAATTAAATCTAGGACATAAGAGGAATCACATTATTTTTGACAGGGATGGCAAACCAATAAACAGTAAAACAAATCTAACTGTTATAAAAGCAAAACATTTCCTTGACGCTGTTAAGAAAGATGATGAAATCTGTGACAAGGAAATGGTCAGTTCCCTTGATAATGATCGTGATATTGAATTATTGGAGAATACAGGTTCAGTATGTTCATTAGCAAAATCTCAAAGAATATCTGGTCTAAGAGAGAGTAACGAGAATATCCTGGAAGAAGTTAACAAAGATTGCAAAATCAGTGATAAGGAAGTGGCCAGTTGCTTAGATCCTTATACAAAGACAGCCAATAATGATTATGATACCAAATTAGTGAAGAAAAGAGATACATCAGCAAAATCACAAATAGTGTCTGGACTAAAAGAGAGTAATGAATCTGATGAATTATCATCAGATACCAAAGATAATGTTGTAGAAAATACTTCATTGCCAAACACATGTAACAGAACTGTGGTTGATTACTCAGATGCTATATTTGATATTATGAAACAAGATCCAGAAGACCACTTGTCTGTTGAGCTGAGTGTTCCAGTGAAAAAGAAGGAAAAGAGAAAAAAGAAGAAAAGGAAGTTTAAAAGTATTCCAGTACCATTAGAAATATTGTCTTCAGATGACACAATGAAAAAGTACTGGGCTCAAAGGTACAGATTATTTTCAAGGTTTGATGATGGAATCAAACTAGATAAAGAGAGCTGGTTTTCCGTTACACCTGAGAAAATAGCAGAGCACATCGCCTCTCGCTGTCGGTGTGATGTAATTGTTGATGCTTTCTGTGGTGCGGGGGGAAACACCATCCAGTTTGCATTTACTTGTGAAAGAGTTATTGCAATTGATATTGACCCTGTTAAAATTGAGATGGCAAAGCACAATGCAGCTGTGTATGGTGTGGAGGATAGAATTGAATTCATTCTGGCAGATTATCTCAAAGTGGCTACCAGCCTAAAGGCCGATGCTGTCTTTCTGAGTCCACCATGGGGAGGTCCTGAATACCTCAGTGCTGAAGTGTTTGATTTAGAAACAATGATAGAGCCCAGCTCAACAGAAATATTTAAAGAAACCAGAAAAATAACAGATAATATTGCATTCTTTGTGCCAAGAAATGCAAATATGGATCAGCTAACAGCACTCGCTGGACCTGGTAAAAAAGTGGAAGTTGAACAGAATATTCTTAACTCAAAACTGAAAACAATCACTGCATATTTCGGAGAACTCATTTTACATTAA

Transcript

CsqKR_Scaf103_28.13

GTTATTACAGTTAACTGTGTGAGTTGAAAAAAGAAATGTGCTACCAGTGGAGTCACATCGCGGAGGTGGAGTTACTGCATAGTGGTGTTGGTCTAGAAGAGTCACAGAAAATTCACTGTCAGTGTACTAGAGCTTTTATTCGAGATTATGATCTGTGCAAACTTGGGCTGGTGGATGAAAATGAAGTTCTAACTAATGACTCAGACCTTTCACAAGAAGACTGTCTTGACGATAATGAAGTTGTAGATGAAGATATCATCTTAATGCAACAGATGGGTCTTCCAATTAGCTTTAGAGGAAGTAAAAAATGCATTGATGGAGACAAAAAAATGGACTATTCCAAGAGCAGCAATTCAAAAAGCAAAAAGAAAAAACGAAAAACTGACAAAAGAAGACGTAAAACAGATAATTATGAGTGTACTGAAGAGAAGACTGAAGAGATGGAAACAATACCTGAACATTATTATAGTGAAATTGTTGAATTGTTAAAACACCAGTCAAAAGATTGTGAAATGTCTAGCTGTGTCTCAGATATATATGATCATTCTGGTCAGAATAATTATGAAGCAGAAAAACATCCAGATATGACCTGTTTGACTACAGAGGTTCCTGATGTTGAAACAGCTTGGAAGGAGTTTTGGGGAAAGTATGGGGAGATGGTGGTGTGGCAGGCTTGGGTAGCAAAATACCCAGACCATGTAGATTATGATAAACTGACAGTAATTCCTTCTGCAGTAGAAGTGGAAATAAGTACTGAGATTGAAACAGGAAAGATTACCATAAATATGAATTCAGATGATGATGAAAATGATGATGAACACAAAGCAGGATCTCTTTGTGTTGCCATGGATACTAAAAACAATTCTCTCTTTGGAAATAATGAGATATCCCCTTCCATTGAAAGGTTATCTGTTGATTTCCATAATGAGAAAAATGATAGTTTAAATGAAGACATCAAAAAAGGTCCTAGTCAGATTATCTCTGAAAATAGTTGTGACATAGCAGAAGGTTTGAATTCCATGTGTACAAATGAAAATAATACACTGGCAAATCTGTGTACACTGGATGAGAAAACTACACCAGTTAGTGCATCTCTGCAGCTGAAATCTAGTGATAACCTGGCTGTTTTCAACCAAGCAATTGAATCGACCATGAGGAATCGCACAGAACAACTTATCCCCGCAGTAAACTCCTCTAATCTTGCATCATCTCTCGATCCAGCCACAGAGAACAACAGAATTAATGAAAATGCAGAACTTGTCCATATGATGCATAGTTATGCAGGATTTGATGCCAGAGACAACCAAGAAGATAGAGAAAATAATAAAATAACTGATCATGAAGCAGGAGTTGATTCTAGCTACAGCCAGGAAGATACAGATGATAACAAAATGACTGACCAAGTTTCAGAAGACACTGAACATATACAGGATTATAATGTAATGTGGCAGGAGTTGTGGGATGAACATTACACAGAGACGTACTGGTATCACTTTAACAGATTTACAACTTGGTTTAACCAGAGTTTGGCAAGTTACATGGCTTATCAGGTCAATCCAGCTAATCCAGTCACTTGTCTAAAATCCAATATTAATAAAGATAGTTGTACTTTGAATGGCAAAATGGACGCAGCTGAAACTGATCATGTTATTACTGGTGAAATATTGGACAGAAATAATTGCAATATAAACTGTGATGGTGATACATATACAAATAATCAGGATAACTGCAAAGAATTGGTCAGAAATGAAAATGATAGTAAATTATCTGATGAAATAAAAAACCAGCAGAATACTTGTGAAGTGAAAACTGAGGGTATCAGTAATCTTGGAATACGTAACTATGGAACTGATAAAACAGAAAAAAGTAATTCATGTGAAGGAGATACTAAAGTTAATATTAATAATCAGCCAGATGTTTTCAGCAAAAATTTTCTTGTAGCACAGTCCAAGGCTGACTTTGTTAATAATGTGCACAGTGACAATAATGCTGAACTGGATAATGCAAGTTTAATTCAGAACAGATTTTCTCATTTAGACATATGTACACAATTCAGAGAGTGTCAGAGTGCTGAGACAGAAATCTCAAATGATGATATTAAAAATTGTTTGAAAAGTGATGAACAATTTCAGGGAAATTTCCTAAGTGTGGAAAAGAATCAATCATGTGATGAAAATTTAGAACCTACTGACGGCAGGTCTGATAGGCAAAAACATAAGAAAAATTCCAATCAAGAAATTAAAAAACAAGATTCTAATAAATCACAGAATATAGGACAACAGAGTAGCAGTGGTGTACAGAGTTCAAGGATACCTCCAGGAGGTGAGGGAGGTGATGATGACCCACCAGATGAAATACCAATTAAACTTTCAAGAAGCCATGAAATTGATGATAATTATGAAGATGATGACACAAAAAGAAAGAAGAAAAACATTCGAGAAGCACTTAAGTCATTTGGCTTCAAATTAACCCATACTGTTGCAGGGCAAGAGCCTTTTTGTCATAAAATCAGAAGTGGAAAAATAATTTACAAGAATCCCAGAATCAAGGAACAGACATCTCAATTAAATCTAGGACATAAGAGGAATCACATTATTTTTGACAGGGATGGCAAACCAATAAACAGTAAAACAAATCTAACTGTTATAAAAGCAAAACATTTCCTTGACGCTGTTAAGAAAGATGATGAAATCTGTGACAAGGAAATGGTCAGTTCCCTTGATAATGATCGTGATATTGAATTATTGGAGAATACAGGTTCAGTATGTTCATTAGCAAAATCTCAAAGAATATCTGGTCTAAGAGAGAGTAACGAGAATATCCTGGAAGAAGTTAACAAAGATTGCAAAATCAGTGATAAGGAAGTGGCCAGTTGCTTAGATCCTTATACAAAGACAGCCAATAATGATTATGATACCAAATTAGTGAAGAAAAGAGATACATCAGCAAAATCACAAATAGTGTCTGGACTAAAAGAGAGTAATGAATCTGATGAATTATCATCAGATACCAAAGATAATGTTGTAGAAAATACTTCATTGCCAAACACATGTAACAGAACTGTGGTTGATTACTCAGATGCTATATTTGATATTATGAAACAAGATCCAGAAGACCACTTGTCTGTTGAGCTGAGTGTTCCAGTGAAAAAGAAGGAAAAGAGAAAAAAGAAGAAAAGGAAGTTTAAAAGTATTCCAGTACCATTAGAAATATTGTCTTCAGATGACACAATGAAAAAGTACTGGGCTCAAAGGTACAGATTATTTTCAAGGTTTGATGATGGAATCAAACTAGATAAAGAGAGCTGGTTTTCCGTTACACCTGAGAAAATAGCAGAGCACATCGCCTCTCGCTGTCGGTGTGATGTAATTGTTGATGCTTTCTGTGGTGCGGGGGGAAACACCATCCAGTTTGCATTTACTTGTGAAAGAGTTATTGCAATTGATATTGACCCTGTTAAAATTGAGATGGCAAAGCACAATGCAGCTGTGTATGGTGTGGAGGATAGAATTGAATTCATTCTGGCAGATTATCTCAAAGTGGCTACCAGCCTAAAGGCCGATGCTGTCTTTCTGAGTCCACCATGGGGAGGTCCTGAATACCTCAGTGCTGAAGTGTTTGATTTAGAAACAATGATAGAGCCCAGCTCAACAGAAATATTTAAAGAAACCAGAAAAATAACAGATAATATTGCATTCTTTGTGCCAAGAAATGCAAATATGGATCAGCTAACAGCACTCGCTGGACCTGGTAAAAAAGTGGAAGTTGAACAGAATATTCTTAACTCAAAACTGAAAACAATCACTGCATATTTCGGAGAACTCATTTTACATTAAAAGAAAACAGAACTTCTATTCATTGTATGAAGAAGAATTTTTTAAAGATTGATTTGTATTATTTTTTATTTACATTTTTTACTTTAGATGTAATTTTTATTTGTGAATAAAATTAGTGTTTTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09445	Methyltransf_15	RNA cap guanine-N2 methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019012	Family	RNA cap guanine-N2 methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14741	S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0036261	Biological Process	7-methylguanosine cap hypermethylation	Interproscan
GO:0071164	Molecular Function	RNA cap trimethylguanosine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_28.13 global RNA-seq network