Gene detail

Detailed information of CsqKR_Scaf103_26.33 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_26.33	WASH COMPLEX SUBUNIT 5	chr6	31642637	31652624	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_26.33

ATGGCAGATTTTCTTGCAGAAAATAACCAGTGTGGTCAAAATTTACTTAGACTTGTATCCAGGGGAAATGCCATTATTGCAGAATTGCTGCGTTTGGCAGATTTTATTCCTTCAGTATTCAGACTAGATAACAGATTTGATCAAGTGAAATACGGTGAAATATTGTGTGATTTCAGCTATTTTCGAAGTTCGGAATACTTTGATAATAAAATCGACTCAAAAGCTGAACTTCAAGACCTGGATGAAGAATTCAGAGAAAATCATATTGAAATACTCACAAGATTTTATCAGGCTTTTGCTAGTGTCCATAAATATGTGACTGATCTTAACAGATTTCTTGAAGATCTGGAAGAGGGTGTGTACATTCAGCAAACCATGGAATCAGTCCTTTTGAATGAAGATGGCAAACAACTAATGTGTGAAGTTTTGTACCTGTATGGTGTCATGTTGCTGGTCATTGATATTAGAATAGAAGGAACTGTGCGTGAGAGAATTCTTGTATCTTATTATAGATACAGTGCACAGAAATCCTCTGCTGGTGATTCCAATATTGATGATGTTTGTAAACTATTAAGAAGTACTGGATTCTCAAATCAGCCTGGAGCTAAGAGACCACCTGGTTATCCTGAATCATATTTCAATCGGGTACCCATTAATTCTGAATATATTAACATGGTGATTGGTCGTTTGCGGTCAGATGATGTGTACAATCAGATCTCTGCCTACCCTCTTCCAGAGCACCGCTCTACTGCCCTGGCCACCCAGGCCAGCATGTTGTACATTATTCTCTACTTCGAACCAGACATCTTGCACAACCAGCAGGCAAAGATGAGAGAAATTGTTGACAAACATTTTCCTGACAATTGGGTCATTGGAGTTTATATGGGAATAACAGTGAACCTCTTAGATGCCTGGGGTCCTTATCGTGCAGCTATAACAGCACTAAACAACACTCTGGATCCTAGTAATGTCAGGGAACAGTCCATGAAGTATGCCAAAAAATTAGAGCGTCTACATCCAATCCTTGAAAAGTATCTGAAGGAAGGTGTCCTGAAAGAGGAGTTTATTCTAGACAACATCCCAAAGCTGATGAACTGTCTGAGAGAATGCAATGTCACACTGCGTTGGTTGATGTTACATACATCCAACTTACCTCCTAGTGCAGTAGGTAATAAGAGGTGTAAACAGATACTTGACCAGGTGTTGAGTGATTCTCAATACAAACCTCTCAGTGTTTTTCAGCTTCTGCTAAGCACAAGTCAGTTTGAATTTATGCTTAAAGAGTTATTCAAACAAATGCTGGCAGAGAAACAGACTAAGTGGGAAGCATACAAAAAGGAAGGACAAGAGAGAATGCAGGAACTGGCTGATGTTTTTTCTGGAACTAAACCACTAACTAGAGTGCAGAAAAATGAAAATCTTCAGGCCTGGTTTACAGAAATGTCCAAGCAGATTACATCTCTAAGTTATGATGATTCAACATCTGCTGGTAGGAAAATAGTGCAGCTCATTCAGGCTATGGAAGAGGTTCAGGAATTTCATCAGCTAGAAAGCAATTTGCAGGTTAAACAGTTTCTATCAGACACTCGGCGCTATCTTCATCAGATGATTAGAACTATCAACATCAAAGAAGAGGTTCTCATAACCATTCAGATTGTGGCTGACTTGTCTTATGCCTGGCAGATAATAGACAGTTACACTGGTTACATGCAAGAAGGAATCAAAAGAGACCCATCACTAGTTATTAAACTCAGAGCTACTTTTCTCAAGATGGCTTCAGCACTTGACCTTCCTCTGATGAGAATTAACCAAGCCAACAGCCTTGATCTGATGAGTGTGTCTCAGTATTATTCTGGGGAGTTAGTTGCCTATGTGAGAAAAGTGCTACAGATCATTCCACAAACAATGTTTAGTCTTTTAGCAAAGATTATCCAGCTTCTGACCAATCAAATAAAAGAGGTTCCTACTCGCCTGGAGAAGGAGAAAATGAAGGAGTATGCTCAGCTGGATGAGCGATACGAGGTTGCTAAATTGACACATTCCATTTCTGTGTTCACAGAGGGTATTCTTATGATGAAAACAACACTAGTGGGAATAATTAAGATAGATCCCAAACAGCTACTAGAAGATGGTATTCGTAAAGAACTTGTTTGGCAAGTGGCCCTTGCTCTTCATCAGGGTTTAATATTCAACCCAAAAGCAAAGGTAAGTGAATTGCTACCAAAGCTGGACTTGCTGGGTGAACAGATGGATGGATTTCGCAGGTCATTTGAGTACATACAGGACTATGTAAACATATATGGACTGAAGATTTGGCAGGAAGAAGTGTCACGCATCATCAACTACAATGTGGAGCAGGAATGTAACAGTTTTCTGAGAACAAAGGTTCAAGACTGGGAGAGCATCTATCAGTCAACTGCAATTCCTATCCCAAGATTTCAACCAGTGGATGAAAGTGTTAATTTTATTGGCAGACTGGCTCGCGAGATATTGAGAATAACAGATCCCAAGTAA

Transcript

CsqKR_Scaf103_26.33

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10266	Strumpellin	Hereditary spastic paraplegia protein strumpellin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019393	Family	WASH complex, subunit strumpellin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15691	WASH COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005768	Cellular Component	endosome	Interproscan
GO:0007032	Biological Process	endosome organization	Interproscan
GO:0030041	Biological Process	actin filament polymerization	Interproscan
GO:0051125	Biological Process	regulation of actin nucleation	Interproscan
GO:0071203	Cellular Component	WASH complex	Interproscan
GO:0140285	Biological Process	endosome fission	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_26.33 global RNA-seq network