| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf103_25.42 | UV EXCISION REPAIR PROTEIN RAD23 | chr6 | 31556752 | 31562281 | + |
| CDS | |||||
| CsqKR_Scaf103_25.42 | |||||
| Transcript |
| CsqKR_Scaf103_25.42 |
| Protein |
| CsqKR_Scaf103_25.42 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | ULD|UBL|NEDD8 |
| Ubiquitin Family | UBD|Alpha-Helix|UBA |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_Other |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_PIM |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF00627 | UBA | UBA/TS-N domain | Domain | Interproscan |
| PF09280 | XPC-binding | XPC-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000626 | Domain | Ubiquitin-like domain | Interproscan |
| IPR004806 | Family | UV excision repair protein Rad23 | Interproscan |
| IPR006636 | Domain | Heat shock chaperonin-binding | Interproscan |
| IPR009060 | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR015360 | Domain | XPC-binding domain | Interproscan |
| IPR015940 | Domain | Ubiquitin-associated domain | Interproscan |
| IPR029071 | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR036353 | Homologous_superfamily | XPC-binding domain superfamily | Interproscan |
| IPR041811 | Domain | RAD23A/RAD23B, UBA1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10621 | UV EXCISION REPAIR PROTEIN RAD23 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003684 | Molecular Function | damaged DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005654 | Cellular Component | nucleoplasm | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006289 | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0031593 | Molecular Function | polyubiquitin modification-dependent protein binding | Interproscan |
| GO:0043130 | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0070628 | Molecular Function | proteasome binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf103_25.42 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
