Gene detail

Detailed information of CsqKR_Scaf103_1.45 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf103_1.45	PBS LYASE HEAT-LIKE PROTEIN	chr6	29110072	29119803	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf103_1.45

ATGGCTACAAAAAAGAAGCGGGAGATGGATCTTCGTCCGTTATGCAAATATGGGGCTAATTGTTATCGCACGAATCCCCAGCATATGCAGAAATTTAAACATCCAACACAACAAAATAAAGAGGAAAAAAAAGAAGAGAATAAACCAAAGAAATTGAAACTTGAGAAAAAGCAGTCAACAACTCTTGATACGTTCATTGACAAGAAAAAAGAAACCCAAGATAAAGATGAGACAAAAAGTGAACCAAGTGAAGATGAAGGAAAGCAATCTAAAGTTTTAGCAGAAGAAAATAAACCATGCAATTCAGAAGACAAGATGGAAATGGAAACCAATGAATCTGATCAAGACGATGAACAAAGAGAATCTCAATCTCCTTTGGATGTGAAAGAAAACATAAAAAACAAATTTCTGGTTGACATGCCAGAAGACTTCTATGACTTCTGGGAATTTTGTCAGAATGAAAATCCAGAGAACCCTTGTGGAAAACATAAAAGGATTAAAAAGATCAGTAAAGGGCAGAAACCAAATTTCTTACGGCACTGGAGATATTACTATGACCCACCTGAGTTTCTCACAGTTATCAGGGGAGATAACGAAAAACAGTTACACCTAGGATATTTCAGAGATGATCCATATGAACTGCCTGTATTTGTTGCATCAAATTGTGCCAGAGAAAATGGCATCATTACACCATGTGGAGAAAACCTCTTTGCTGCAGTTAAACAAAAGGCAGATGAAGCATGGAAACTATCAAAAGCAGATAAGAAATTAAAACATCTCTCTGAAAGATTAGAAAAATGGGCTGGTAACAAAAATTATTCATTGGAAATTAGAACTCAGAATATGAAAGCTAGAGATAAAAAGGTAGTGTGCAAAAGTTTTCATGGTGCTGGAGTTGTTGTCCCTGTGGAAAACGATGTTGGATACAGACCAGTTCCTGAAGCACCAGGTGTGTTGAAAAAGATTTTCAGAAAAATAGCTGAAAGTAAAAATGAAAAAGAACGAGATCAGAACTTTGAGCCACTTCAGGAGCTGATGACTTTAATACAGTTTGCTAATGATGAATGTGATTATGGAGAAGGCCTTGAACTTGGACTGGACTTGTTCACATATGGTGAAAAAACATTTCACAACACAATACTTCATCTTCTTCCTCTGGCCTATGAGCTCCTTAATCGTAAAGAATTCGCAATAATTATTAGAGCTCATTTGAAGAGTAGAAAACATACTTCAGACCTCAGTGAACTTAAATGTTACTATAATTATTTCTTAGAAGCTACAATGCCGTCGGATAGTGAAACATCAGTACTTTGTGTTGGCAAGATATTAGAAGATAAATCAAGACCGTTAATAGAAAGATTCAGAGCTTTATTCACTCTGAGGAATCTCGGCGGACGGGGGGCGATCGACTCAATTTCACGATGTTTTGATGACGAGTCTGCACTTCTCAAACACGAATTAGCTTATTGTCTCGGTCAGATGCAAGACAGGGATGCCATTCCTATATTAGTACAAGTTCTACAAGATGAAACACAGGAACCAATGGTTCGCCATGAAGCAGGAGAGGCTTTGGGTGCCATTGGATCAAAAGAAGTTTTAGACATCTTGAAGGAGTTTTCATCAGATCCAGTAACTGAAGTTGCAGAAACATGTCAGCTAGCACTGAGGAGGATAGAATGGCTGTACAATCCTGATAAAGAAAACTCTTTACCAGAAAACCCATACCAATCTGTTGACCCTGCCCCACCATCATCTGATATTGATGTGTCGAGATTGAAAGAAATCCTCTTGGATGAGAATTTGGCACTTTTTGAGAGATACAGAGCAATGTTTTCACTTAGAAATTTTGGTACTCCTAAGTCTGTACAAGCGTTAGCTGACGGGTTAAAATGTAAAAGTGCCCTTTTCAGACATGAAGTAGCTTATGTTCTTGGACAGATCCAAAGTGACGTATGTGTGAAACAGCTCTCGGAAAACTTGTGTAATGCCTCTGAGAACCCCATGGTTAGACATGAATGTGCTGAGGCTCTGGGAGCCATAGCCACACCAGAATGTGCAGATATTCTTAAAGAGTACTTGAAGGACTCTGAGCGGGTTGTAAAGGAGAGTTGTCTTGTTGCTTTGGATATGAGTGAATATGAGAACAGTAATCAGCTTCAGTATGCAGACACTCTAATGAAAATTAGAACTAACAGCAGTGATGATAATTCTTTAGCTGTTCAGTAG

Transcript

CsqKR_Scaf103_1.45

AAATTTGTTATGGCTACAAAAAAGAAGCGGGAGATGGATCTTCGTCCGTTATGCAAATATGGGGCTAATTGTTATCGCACGAATCCCCAGCATATGCAGAAATTTAAACATCCAACACAACAAAATAAAGAGGAAAAAAAAGAAGAGAATAAACCAAAGAAATTGAAACTTGAGAAAAAGCAGTCAACAACTCTTGATACGTTCATTGACAAGAAAAAAGAAACCCAAGATAAAGATGAGACAAAAAGTGAACCAAGTGAAGATGAAGGAAAGCAATCTAAAGTTTTAGCAGAAGAAAATAAACCATGCAATTCAGAAGACAAGATGGAAATGGAAACCAATGAATCTGATCAAGACGATGAACAAAGAGAATCTCAATCTCCTTTGGATGTGAAAGAAAACATAAAAAACAAATTTCTGGTTGACATGCCAGAAGACTTCTATGACTTCTGGGAATTTTGTCAGAATGAAAATCCAGAGAACCCTTGTGGAAAACATAAAAGGATTAAAAAGATCAGTAAAGGGCAGAAACCAAATTTCTTACGGCACTGGAGATATTACTATGACCCACCTGAGTTTCTCACAGTTATCAGGGGAGATAACGAAAAACAGTTACACCTAGGATATTTCAGAGATGATCCATATGAACTGCCTGTATTTGTTGCATCAAATTGTGCCAGAGAAAATGGCATCATTACACCATGTGGAGAAAACCTCTTTGCTGCAGTTAAACAAAAGGCAGATGAAGCATGGAAACTATCAAAAGCAGATAAGAAATTAAAACATCTCTCTGAAAGATTAGAAAAATGGGCTGGTAACAAAAATTATTCATTGGAAATTAGAACTCAGAATATGAAAGCTAGAGATAAAAAGGTAGTGTGCAAAAGTTTTCATGGTGCTGGAGTTGTTGTCCCTGTGGAAAACGATGTTGGATACAGACCAGTTCCTGAAGCACCAGGTGTGTTGAAAAAGATTTTCAGAAAAATAGCTGAAAGTAAAAATGAAAAAGAACGAGATCAGAACTTTGAGCCACTTCAGGAGCTGATGACTTTAATACAGTTTGCTAATGATGAATGTGATTATGGAGAAGGCCTTGAACTTGGACTGGACTTGTTCACATATGGTGAAAAAACATTTCACAACACAATACTTCATCTTCTTCCTCTGGCCTATGAGCTCCTTAATCGTAAAGAATTCGCAATAATTATTAGAGCTCATTTGAAGAGTAGAAAACATACTTCAGACCTCAGTGAACTTAAATGTTACTATAATTATTTCTTAGAAGCTACAATGCCGTCGGATAGTGAAACATCAGTACTTTGTGTTGGCAAGATATTAGAAGATAAATCAAGACCGTTAATAGAAAGATTCAGAGCTTTATTCACTCTGAGGAATCTCGGCGGACGGGGGGCGATCGACTCAATTTCACGATGTTTTGATGACGAGTCTGCACTTCTCAAACACGAATTAGCTTATTGTCTCGGTCAGATGCAAGACAGGGATGCCATTCCTATATTAGTACAAGTTCTACAAGATGAAACACAGGAACCAATGGTTCGCCATGAAGCAGGAGAGGCTTTGGGTGCCATTGGATCAAAAGAAGTTTTAGACATCTTGAAGGAGTTTTCATCAGATCCAGTAACTGAAGTTGCAGAAACATGTCAGCTAGCACTGAGGAGGATAGAATGGCTGTACAATCCTGATAAAGAAAACTCTTTACCAGAAAACCCATACCAATCTGTTGACCCTGCCCCACCATCATCTGATATTGATGTGTCGAGATTGAAAGAAATCCTCTTGGATGAGAATTTGGCACTTTTTGAGAGATACAGAGCAATGTTTTCACTTAGAAATTTTGGTACTCCTAAGTCTGTACAAGCGTTAGCTGACGGGTTAAAATGTAAAAGTGCCCTTTTCAGACATGAAGTAGCTTATGTTCTTGGACAGATCCAAAGTGACGTATGTGTGAAACAGCTCTCGGAAAACTTGTGTAATGCCTCTGAGAACCCCATGGTTAGACATGAATGTGCTGAGGCTCTGGGAGCCATAGCCACACCAGAATGTGCAGATATTCTTAAAGAGTACTTGAAGGACTCTGAGCGGGTTGTAAAGGAGAGTTGTCTTGTTGCTTTGGATATGAGTGAATATGAGAACAGTAATCAGCTTCAGTATGCAGACACTCTAATGAAAATTAGAACTAACAGCAGTGATGATAATTCTTTAGCTGTTCAGTAGCATGTTATTTTGTTTCTTAATAAATACATTTTTTGCTTGTTGTGTAAGTGATGTCATTATTTTCTGAAAGATACACGTTGAAAGATTTGTTTGAAAAACTGCATTTCCATATCAATCTAAATTGTTTTCTTTGTTATTTAGTTAAGGTCTTTTAATATTTATAGGCTACTGAAATACATTTTGGAGATCAGTAAGTTTCACTGCAGAAATAAATTATATTAAAAAAAATATTAATTGATGTATTATTTTCAAAATAATATTTCGAAAATTTAATGCTTTGAGAATTTTTATTAGCATAAAACCTTTTATTTTATCCATTTTTGTCAGATGCATATTCTTAATTAAAATGTACCCGTACACCAAATTTGCTAAAGGTAGAATAGTAAAAACAAATGTGTATATAAATACCTGTTTAATTGTTACCAATGTCAGACATACAGTTTTGGATAAAATATTTAACATAAAAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03130	HEAT_PBS	PBS lyase HEAT-like repeat	Repeat	Interproscan
PF10228	HPF1	Histone PARylation factor 1	Family	Interproscan
PF10283	zf-CCHH	PBZ domain	Domain	Interproscan
PF13646	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004155	Repeat	PBS lyase HEAT-like repeat	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR019361	Family	Histone PARylation factor 1	Interproscan
IPR019406	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR021133	Repeat	HEAT, type 2	Interproscan
IPR027517	Family	Deoxyhypusine hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12697	PBS LYASE HEAT-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0008612	Biological Process	peptidyl-lysine modification to peptidyl-hypusine	Interproscan
GO:0010835	Biological Process	regulation of protein ADP-ribosylation	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0019135	Molecular Function	deoxyhypusine monooxygenase activity	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf103_1.45 global RNA-seq network