| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf103_0.12 | ADENINE DNA GLYCOSYLASE | chr6 | 29064726 | 29071876 | - |
| CDS | |||||
| CsqKR_Scaf103_0.12 | |||||
| Transcript |
| CsqKR_Scaf103_0.12 |
| Protein |
| CsqKR_Scaf103_0.12 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00730 | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein | Domain | Interproscan |
| PF14815 | NUDIX_4 | NUDIX domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003265 | Domain | HhH-GPD domain | Interproscan |
| IPR003651 | Conserved_site | Endonuclease III-like, iron-sulphur cluster loop motif | Interproscan |
| IPR004036 | Conserved_site | Endonuclease III-like, conserved site-2 | Interproscan |
| IPR011257 | Homologous_superfamily | DNA glycosylase | Interproscan |
| IPR015797 | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR023170 | Homologous_superfamily | Helix-hairpin-helix, base-excision DNA repair, C-terminal | Interproscan |
| IPR029119 | Domain | Adenine DNA glycosylase, C-terminal | Interproscan |
| IPR044298 | Family | Adenine/Thymine-DNA glycosylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42944 | ADENINE DNA GLYCOSYLASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000701 | Molecular Function | purine-specific mismatch base pair DNA N-glycosylase activity | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006284 | Biological Process | base-excision repair | Interproscan |
| GO:0006298 | Biological Process | mismatch repair | Interproscan |
| GO:0016798 | Molecular Function | hydrolase activity, acting on glycosyl bonds | Interproscan |
| GO:0032357 | Molecular Function | oxidized purine DNA binding | Interproscan |
| GO:0034039 | Molecular Function | 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | Interproscan |
| GO:0035485 | Molecular Function | adenine/guanine mispair binding | Interproscan |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf103_0.12 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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