Gene detail

Detailed information of CsqKR_Scaf102_8.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf102_8.20	SUGAR KINASE	chr2	13559323	13575153	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf102_8.20

TAATGCCCCACCCACAAACCACGCTACTTTTGTTGACAAGTTTCAAAGTTCTCGTTACGACACAAGTTTGACATACGAAATCACTCGAGGCAAAAGTTCATCAGGCATTTGTTTTACGGATTCCACATGGGAACAGTGAGAAACACATGAGGTCACACATTTAAAGCAGACATGTCTGAAGATGGTGGATATGTGTCAAGGTCGTGTTCTGACACAAGGTCATCGGGGTCAGAGGATGAAAACAGTTACGTTTTGGCTCTGGATGTTGGAACAACTGTTCTTCGCAGTCACATTTACGACAGAAATGCAAAGATTAAAGCAACAAGCAGCAAAAAGGTGGAGGTGCTGCACCCCAGGGCTGGCTGGGCGGAGATGGATCCAGACAAACTGTTTGAACAAGTGATCACATCAATAAAGGAATGTGTCAAAGTTTCAGGTTTGCAGCTACATCAGTTGAGGTGTATGGCAGTCGCTACTCAGCGAGGAACTTTTATAACATGGGACAGAGAGACAGGAAAACCATTCCACAACCTGATCACCTGGCAGGATCTGAGGTCTGCGAACTACGTGAAGACCTGGAACCAGTCCTACACTATGCACGGACTAAATGGAGTTTCAAAATTACTTCATCTGATAACGAGGAAAAAAAGATTTCTTGCTGCTAGTGTTCTCAGGTTCATGTCCAAACAGGTGACATTAAGGTTACTCTGGGCACTGGATAACATTCCAAAGTTGCGACTCAGGGCATCTGAAGGTCAGGTGATGTTTGGGTGTATTGACACCTGGTTGGTATGGAAACTGACAGGTAACAAGGTACACGCGACTGATTATTCTTGTGCAAGCTCAACAGGACTTTTTGATCCTTTTCAGATAGAATGGAGTTCCATTGTCTGTAATCTTGTCAACATTCCTATGTCCATGTTTCCTGAAGTACGAGACACAAGTGGTTACTTTGGAGACACTGATCCGAGCATCCTTGGCGAAGCTATTCCTATAACCTGCGTGGTAGCTGATCAGCAGGGAGCCATGTTTGGTCAGTGTTGTTTTCAGATTGGAGATGTTAAGTGTACTCTCGGAACAGGAACTTTTATTGATCTGAACACAGGAAGCAAACCACACGCATCTATAGCAGGTCTGTATCCTCTGATTGGCTGGAAGATTGGAAAGGAAATGGTTTTCATTGCTGAGGGGATAGCAGCAGACACTGGTATTACACTAGAGTGGGCACAGTCTCTCGGATTCTTTGAAGATGTGTCTGACACAGCAAGTTTGGCAGAATCTGTCCCTGACAGTGGAGGTGTGTATTTTGTGCCAGCTTTCAGTGGACTGCAGGCACCAATCAATGACGACGGCGCGACATCGTCTATGATTGGGATGCGACCAGACACAACAAAGGCTCACATCGTCCGCGCAATCCTCGAGTCCATCGCTTTCCGTTTCAAAATCCTGTATGAGACAATCCTGGCAGAGACAAAAATACCAATATCAAACATGAGGGTGGATGGGGGTGTGGGTAACAACAAGTTTCTGATGCAGCTGATGTCAGACTTGGTGAACAAGTCGCTGGATCGCTCGGAGCACGCAGACATGACCAGTCTCGGAGCAGCCTTCCTAGCCGGGCTAGCAACAGGTATCTGGGAGAACAAGGAACAGTTGTGTAGTCTGCGAAGATCTCACTGCATCTACGAACCTCGTCCAACGTGGAAGAAATACAAGGACACTTTCCATGAGTGGGAGCGAGCGGTCAGTCGGTCACTTCAGTGGTACCAGGGAGAAAACAGAGAACAACATGAAGAAACCTGATACAACATGGTGTTTGCAGCAAATTAAAAAAAAAGTATTAAAAAAATCCATGACAAAAATAAAGAAAAACAATTGGAAAACTTAATATTATTTTCTGTCATGCAGATTAAGACGAAAAGAAAAGAAAAGAGAGCTAGAAACTAAATGTGAAAGTAGAATGGATGGATGGATGGATGAATAAATGAATGAGTGAAAGAATGAATGAATGAATGAGTGTTAAATGACACCCCAGTTTGAAAAACAGTTCAGCTGTTGGGTGTCAGAGATGTGGAAAGATTAATGTAAAATTAAATAATAAAATTGTATAAAAGTTTCAGTGTTTATTAAAACACAGTGTGATAATGTAAAAGTAGATACATCCTTTCAGTTTTCTGCCTAGCAGATTAACAATTTTATCTTTTCAACATGTTGCTTTGATAGCTACAAAAAAGAAAGATAAAACTTCATAAAGGTTCTATAAACCGTTGATATTTAGATATAATGGGTGAGAGAAAATATAGGTAGAAAGTAACAAGATTTATGGACAGACATATTAGTTGACAATTTAGATAACAACTGACACAGATTCTAGTTGGATAAATTATTTAAACTTGTACAGTTTCAGTGTGTAATCATGATACAGTAAAATAAATTAATTGTCCTATGTAAGAAATAATAAGTTTTTTTTATATACAAATTATTGAAGATGTTAGTTTTAAGGTGCAGTCATTAAAAACATTAAAATATTGTTTATAAAATTTGTAATATAACATATTTTTGGCATGACAAAAATTTGTGAAACCTTGTAATTTTATAATGTTCCTGTGGTAACAGGAAATGGAACCAAAACTTTAAATAGAGTACAGCAAATTCATGAAATTTCTAATTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTGAAATGTCCAAATAACAACATAAATAAATTTAGGATATTTTCTGTATGGCAGTTTTAAAACATTGGCTATTACATGTATAAAATACATACAAAAATTTAAAATTTTCTTTGCAGTAGTTTATTAAAAATATTATTGTAATATTACATGAACACAAAGAAAAGTAGATCAAACAAAAATACGTTTTTTTTTTTAAATATTAATTTCTTCGGACACTAATAAATTTCTGCAAGAGAGCAGAAAAGAGGTAAAAACTTGCAAAAGATATTATGTAACCATGGCAACAGTAGGCAGGCAGCTTTACTATGCAATTACTACATTATTTATAACTTGTGATAATTATAGATGCATATGTTATTTTTAAAATGTATGTTTTACAGTGTTGCAATATTTTTCATTCTGGTTGTATTGATAATGTACTGGTCTCAAGTTATTTCTCTGTATGTGATGAGTTAATGTGTACAGAACTGAATTGCCTTTGTGTACAGACACACACACACACACACACACACACACACGAATATATTCATACATACACAAACAGTGATTATGAAAATCTTTTTAAAAATCGACCTTTAATATTATTTATTTGTGTGTGTGTGTGTATATGTATATATATATATATGGGTGTATATATATATATATATATATATGGGTGTATATATATATATATATATATGGGTGTATATATACATATGTTACAGGAATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00370	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF02782	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000577	Family	Carbohydrate kinase, FGGY	Interproscan
IPR018483	Conserved_site	Carbohydrate kinase, FGGY, conserved site	Interproscan
IPR018484	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR018485	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR037444	Family	Putative glycerol kinase 5, FGGY	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10196	SUGAR KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006071	Biological Process	glycerol metabolic process	Interproscan
GO:0006641	Biological Process	triglyceride metabolic process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016310	Biological Process	phosphorylation	Interproscan
GO:0016773	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0046167	Biological Process	glycerol-3-phosphate biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf102_8.20 global RNA-seq network