Gene detail

Detailed information of CsqKR_Scaf101_2.22 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf101_2.22	HOMOSERINE O-ACETYLTRANSFERASE	chr8	8346761	8354099	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf101_2.22

TGTTTTCTATGGCAGGGGCCCATCGTCTGTGAACCCCCTCACCAACCAGCCATATGGTACAAGTTTTCCAATTGTCAGTGTAGAGGATATGGTTAGAGCACAGTTTTTGCTTATGGATCACCTGGGAATTAAAAAGCTTCACGGGGCAGTTGGATCATCACTAGGTGGGATGTGCTCGTTGATGGCAACAATCTTGTTCCCAGAACGAGTTGGAAGATTTGTTTCAATATCTTCGTGTGCGCAGTCTCACCCATCGTCCATTGCAATGCGGTACTTACAGAGGAAGTGCATAATGAGTGACCCTAACTGGGACAAGGGACATTACTACAATGGAAAGTTTCCCAAGATTGGAATGAAGCTGGCAAGAGAAATTGCGACACTTACCTATCGCAGCGGACCCGAGTGGGATGAGAGATTTGGTCGACTTAGAATCAACGACAATGATGCTCCTTCACTCTGCCCAACATTTAACATAGAAAGTTACCTGGAGTACCAGGGTGAAAACTTCAGCACTAAATTTGACCCCAACTCTCTCCTTTATATTTCTAAGGCCATGGACCTGTTTGATGCAGCTGAAGGATTTAACTCACTGGAGGAAGGATTAGCTAGGATCACTTGTCCTGCGATGGTCATTGGTGTCCAGACAGACATACTCTTTCCCATCTGGCAGCAGAGAGAGCTGGCCAGTGCCCTGCAGAGAGCAGGTAATGAAGCAGTGACATTTTATGAACTGAACTCTTTGTATGGTCATGATACATTTTTACTTGATCTTAATGGAGTGGGAGCTGCTGTCAAAGGCTTTCTTGAGACAGACATGAAGGAATTTGGATGGCTCACAAAGGAAAGATTAAAGAACACAAATAAGAAAGACAAGGAGAGACTGTATTTCTAGAGTGATAGTTATCTGAGGACAGTTTAACTTCTTTTTTTCAAATGAAACATTCTGTATTTGAATTTATTTATCTACATGATTCTACTTTTGTTTCTCTCACTCTCATTATCTGTCTACTGGTTTTTTCTCTCAGTTTCCTTTTTTGTATCTGTCAGTTTATTTCATTTTTCACAACTTCCTCTACATCGTTTATGCTTTTGCTATCATTGTGTATCTTCTCTTTGTTGCTGTTTTATATATGTTGATGCCTGGTATTAATTCATGTGGACAGGGAATATTTTTGTAGTGGAAAAGGTTGTTTTATTTTCTTATTGGCATTATTTGTTGATATTATATCATTTTTAGAATTCATGCTAAAACAGAACAAAATACTGTTCTTTTAAAATGCCAGAAAATGATATTTTTCTTCTGCACAAATATTATCAGAGGTGCTAACAAAGTCTAAGCATCTTCCCTTTTTTTTCATTGTTTGTACTGGCTGAATTCTTGTCTCAGTATGAGTACAAGACATTTGAATATACCTTAGAAATGAAAATGTTTACATGATAGTTGTCTTTTTTTCAAAACCTGTGATTTAACTTTAATTAAAATGTAACCTGACATGGTATACTGTTTGGTTTATTCTGACAGAGTTTGTGGTATCTGTTGTTTGAGTGGAAGATTAGGTCTGATTTTGACAGTCACTGTTGTGAAATATTACAACACAAGGGTATGACTTCCTAGTTAAAGGGATGAGTTTTTCACGTTTTGAAAGAGAACAGGAAGAGGGAGATTTCACTGACAGATATATATGTTAATGGTTTGTGCTGCTATGGTGTTTTAGAAATTTGTATACCAATGAGATGTATCATTTGTTTAAATAATTTGTTTAAAAGATTTACATATCTATTGTTATTTGTTGAATGTATCATCAAACTGTTAATGGTAAAACTAATGCAGTTTTCTAATTTTATTCAGTATTTAATATGATAAAGCAAAGGGGATTTGGTACATGGTTTTTTTTTTTTTTTTTGTATGTATATCTGTGAACTCCATACAGACTTACAGTTGTTTGAAGGTGCTACTTATCACATTGTTTATATCATGTAACATACTTAAAATGTTTAATCTATGTTGTTGTTGTAACTTTAAAAATAGTTTTAAAAAACTCAAAATGTAAAAACAGGAAAAACAGAAAAAAAGAAGAAAAAAGTAATTATTTTGAAATGTTTGACAATTATGTTTATTTTACTTATTTTTTTAAATTTTAAAATTTTTTTTAATTTTTTTTTTTGTTATGATTAACGCCAAGTGCCACTTCCTGTCAGATGCACAAACAACTTTTTTCTTCTCTTTTTAACTGTTCAGTTATAATTATATTCTTATATTTAATTTTATGCTTGAGAAATGTGTAGTGCTTATGGTTGTCTGGGATTTCTTTATATACATTTTTTTTTTGCTATCTACAAAAGCACTAAATTGTTAAGCATATACTTTGTGTTTTCATTTTTATGTTATCTCATATACTTGTATGAGCTTTTGTGTTTGTTTTATTTGGATTCAGAATTTTTCTAAAAGTATGGGATTCCATAAAATCTATATGGAAAATAAAAACAATGTCTAAGATGGCTGATACATGGTCCCATAGACAGGTATGCTGTTGATTTAAAAGGTTAATGAAAAAGGTATTAGTTACCTAATAAATATTCAGATTAAAAAGTGAAACTATTGAGATGTGTCAGAAGTTTGTTACACAGAAGTGTTTTATCTTCAATACTGATTGTATTTATATAAAAAAAATTAACCAGATTTGTTGAATTAGTGTTGATAAAATTTTAAATCACGATTAAACAAAAATGTGTTAAATCAATGAAAATTATTTATATTTTTGCTACTAGTCTGCTTTGTAACTACACAAATTATTTTCAGATGATTGATATATGATTGCATTTATCATTGTTATGATGCCTTTTTCAAACGTTTTTGTAGTTGATGTTTAATCAGTGGCAATGAGTTCAGATTACTTCAGTAATTTATTGTATTTTTCATTTGATTAATGATACCAATAAAGAGTTCAGTCATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000073	Domain	Alpha/beta hydrolase fold-1	Interproscan
IPR008220	Family	Homoserine/serine acetyltransferase MetX-like	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32268	HOMOSERINE O-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004414	Molecular Function	homoserine O-acetyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006535	Biological Process	cysteine biosynthetic process from serine	Interproscan
GO:0009001	Molecular Function	serine O-acetyltransferase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0009092	Biological Process	homoserine metabolic process	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf101_2.22 global RNA-seq network