Gene detail

Detailed information of CsqKR_Scaf101_2.17 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf101_2.17	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	chr8	8310635	8324595	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf101_2.17

ATGGAGTCAAAAAAAATCCCAGATGTTGTTCTGTTTATTCTCGTGATTATATATTTGTCAACTATTATAACAACAAGTGCTATGTCCCCATCTCAAAAGAAGAAAATAAAGGAACAAGTTCTTCAAATGTTTGACCACGCTTATGGATCTTATATGAAACATGCATACCCGGCAGATGAGTTGATGCCACTGAGTTGTAAAGGAAGATACAGAGGAACCAAACCCAGTCGAGGAGATGTTGACGACACACTAGGAAATTTTACTCTCACACTCATCGATTCCCTGGATAGTTTGGCAGTTCTTGGGAAACTGGTTGAGTTTGAGACTGCGGTGCAGAATGTCATCAGAGATGCCAAGTATGATGCTGACATTATTGTGTCTGTGTTTGAAACAAACATCAGAATTTTAGGAGGTCTTCTGGGAGGACATGTGGTTGCAAGTTATCTTAAGAAGAAGAAGAAAGGAATGATGTGGTATAACCAGGAGCTGCTTGACATGGCAAAAGAGGTTGGAGACCGACTGATGCCAGCCTTCAACACCACCACAGGAATTCCTTATCCCAGGATAAACTTGCGGAGTGGCATAAATGATGCAATCAGTACACAGAACAAGGACACATGTACTGCGTGTGCAGGGACAATGATTCTTGAGTTTGCTGCTCTCAGTCGACTGAGTGGTGACCCCAGATACGAGATGAAGGCTCAGAAAGCTATGGACTTCTTATGGAATCAGCGACATCACACAAGTGACCTCATGGGCATGGTCATCAACATCCACAACGGTGACTGGATACGTAGAGAGAGTGGGGTTGGTGCAGGGATTGACTCATACTACGAGTACGTACTCAAAGCGTACATTCTTCTAGGAGATGAGACCTACTTGGACAGATTTAATAAGCACTACGATGCGGTGATGAGGTACGTCAGTCAGGGGCCGCTGCTTGTTGACGTACACATGCACAAACCCGAGGCAGTCTCTCGTAACTTCATGGACTCACTCCTGGCTTTCTGGCCAGGTCTGCAGGTGTTAAAAGGTGACATTGGACCAGCAGTAGAAACACATGAAATGTTGTACCAAGTCATGCAGAGACACAACTTCTTACCTGAAGCCTTTACAACAGATTTCCGAATTCACTGGGGACATCACCCTCTGCGACCAGAGTTTGTTGAGTCCACCTATTTCTTATACAAGGCTACAGGTGATGCACACTACCTGGATGTAGGTAAACTGATAATAGACAACTTAGAGAAACATGCCCGAGTTCCATGTGGATATGCTGCAATTAAAGATTTAACGAAGGGAACACATGAAGACCAGATGGATTCGTACATGCTGGCAGAGACATTTAAATATCTGTACCTGCTGTTTTCCGAGCCTGAGGATCACGTGTTACCAATAGATGATTACATATTCACCACAGAGGCTCACCTCCTGCCCCTGTCTCTGTCTTTAACCAACAAATCTAAATCATCAGCAAAGATTGAGCCAGAAAGTTACAGGAATTTAGACAGAAACTACGACACGGAGGGCATATCGGAAAGAGAGGTGTCAAATTCCGAATGTCGGAGAGGTGGTCTAGAAATGGATGCTAATCACAACACCTGTCCAAACCTACAGGTAATGCTACCTGGAGGACAGAATTATGCGTATGGACTTCGTCATCAGATGAAGAATCTCGTTAACAAAGTGAGCCCACCTCCTCACAGGGAAAGAGAAAGACTGAAGGCTGGAGACTTCATTGCAGGAAACAAGGAACAACTGGACATTCTACACAGGATGGGAATCCGAATTCAGACAATGACAGATGGAAGAGTCCAGTTACTGCACACAGCATCTGAGGCTGCCAGTCCTGCTGATGCCGAGGATGGGATGAGGTTTATGCAGGAGATGATAGAGTTGTCAAAAACACAAACACAGGAAGGCTCAGCACAACATGATCCAATGTTTGTCAAAGTGTTGTCACCAAACTTCTCTGGTCCCTCTCTGTTTAAAGCAGGACCTGCTCAGTTTGGATACAACCTCAAAGAGTCTCCACCAGTTGATGGACAGTTAGCTGTTGCCAGTCCTTTCAAAGCATGTACCACTCTGATGAACCCAAATGAAGTGTTTGGTAAAATAGTCCTGTTAGAACGAGGTGAATGCATGTTTGTTGACAAGGCAAGAAATCTAGAGAAAGCTGGAGCTGTGGGTGGTATTGTTGTTGATCACAATGAAGGGAGCTCGGTGGAGAGCCAGGCCTTGTTTGCGATGTCAGGGGACGGGAAAAATGACATAACAATTCCCATGGTGTTTCTCTTCGAAAAGGAAGGCTCTCAGTTGATCAGTGCTGTACAGGACATGGGTGTGGTGCAAGTGTCTTTGCAGGATTCGAATGCTGAAAAAATACTACAACCCTTACCACCAGATGGCTCACAACCAGAGGAATCTGGAGGTAGTCCTTACATACCAGATCAAACTCCTCCATATCACAATGCTCCTATGAGAGGAGGTGACCAGGAGCTCCCAGTCTCCTTCCAAGTTGAATCTCGGCGAGTACACATGAAGGTGAAGGTCTCAGAGGGGAGTGGAAAAAATGAAGTGTTTAGTTCAGTTGATACAGATAATGATGACAGAATTCTCAAAGTTGTTGAAAGACCAGATGGATCGATACATGTTGGTTTCAGTGTGGATGACGACGATGAGGAAGATGATAAGGTTAAGAAAGATGTTAAGTTCAATGATATTTATTCCAGAATCTTGAAAACTTTGAGAGAGAAGACCAATTTTGACACTCTGACTGACAGAAGTGAGTACTTGAATGTTATTGCTCGTTTTCTCGAGTCATCACACGTTGGAATTGGAATGGTGGACAGCACACTGCGAGAGTTGATAGAAAAACTTGCCTCAGAACTGATGAAGGAGAGACAGCCCTCGAAACAGACTCAGAGAGTGGAAGACGGAAGACATTACGCATCACAGGAGGACTTTGCTGAATCTGGAAGTCATTTTTCTAAACTGAACACAGATGTCAAACAGTCTGAATATTTTAAAGGTCACATTCAACAAGACAGCAGTGTGAACGACCATCAAAAATCCGAGTTTACAGATGAACAACAAAGTAGAAGCAGTTCAGATGTTGCCGAATCGGCACAGACAGAGTCAAAGGTTGAAGGTTCGTCAGATTCAGTGGTTACTTGGTCTACACAACACCTGATCATGACTCGGAAAACCCGTATGGAGCAACCATTGATGATCATGGGATTTTAA

Transcript

CsqKR_Scaf101_2.17

AGATAATTTAACAACATGGAAGAGTAATAAAGTTTGATGTTTATAGTTTTGGCTCATTAACATCACCACGTCTTCGATGCAGTTTACATGTTTAAATATTTGGTTTAATTTGTACCGTTCGGTACCATGGAGTCAAAAAAAATCCCAGATGTTGTTCTGTTTATTCTCGTGATTATATATTTGTCAACTATTATAACAACAAGTGCTATGTCCCCATCTCAAAAGAAGAAAATAAAGGAACAAGTTCTTCAAATGTTTGACCACGCTTATGGATCTTATATGAAACATGCATACCCGGCAGATGAGTTGATGCCACTGAGTTGTAAAGGAAGATACAGAGGAACCAAACCCAGTCGAGGAGATGTTGACGACACACTAGGAAATTTTACTCTCACACTCATCGATTCCCTGGATAGTTTGGCAGTTCTTGGGAAACTGGTTGAGTTTGAGACTGCGGTGCAGAATGTCATCAGAGATGCCAAGTATGATGCTGACATTATTGTGTCTGTGTTTGAAACAAACATCAGAATTTTAGGAGGTCTTCTGGGAGGACATGTGGTTGCAAGTTATCTTAAGAAGAAGAAGAAAGGAATGATGTGGTATAACCAGGAGCTGCTTGACATGGCAAAAGAGGTTGGAGACCGACTGATGCCAGCCTTCAACACCACCACAGGAATTCCTTATCCCAGGATAAACTTGCGGAGTGGCATAAATGATGCAATCAGTACACAGAACAAGGACACATGTACTGCGTGTGCAGGGACAATGATTCTTGAGTTTGCTGCTCTCAGTCGACTGAGTGGTGACCCCAGATACGAGATGAAGGCTCAGAAAGCTATGGACTTCTTATGGAATCAGCGACATCACACAAGTGACCTCATGGGCATGGTCATCAACATCCACAACGGTGACTGGATACGTAGAGAGAGTGGGGTTGGTGCAGGGATTGACTCATACTACGAGTACGTACTCAAAGCGTACATTCTTCTAGGAGATGAGACCTACTTGGACAGATTTAATAAGCACTACGATGCGGTGATGAGGTACGTCAGTCAGGGGCCGCTGCTTGTTGACGTACACATGCACAAACCCGAGGCAGTCTCTCGTAACTTCATGGACTCACTCCTGGCTTTCTGGCCAGGTCTGCAGGTGTTAAAAGGTGACATTGGACCAGCAGTAGAAACACATGAAATGTTGTACCAAGTCATGCAGAGACACAACTTCTTACCTGAAGCCTTTACAACAGATTTCCGAATTCACTGGGGACATCACCCTCTGCGACCAGAGTTTGTTGAGTCCACCTATTTCTTATACAAGGCTACAGGTGATGCACACTACCTGGATGTAGGTAAACTGATAATAGACAACTTAGAGAAACATGCCCGAGTTCCATGTGGATATGCTGCAATTAAAGATTTAACGAAGGGAACACATGAAGACCAGATGGATTCGTACATGCTGGCAGAGACATTTAAATATCTGTACCTGCTGTTTTCCGAGCCTGAGGATCACGTGTTACCAATAGATGATTACATATTCACCACAGAGGCTCACCTCCTGCCCCTGTCTCTGTCTTTAACCAACAAATCTAAATCATCAGCAAAGATTGAGCCAGAAAGTTACAGGAATTTAGACAGAAACTACGACACGGAGGGCATATCGGAAAGAGAGGTGTCAAATTCCGAATGTCGGAGAGGTGGTCTAGAAATGGATGCTAATCACAACACCTGTCCAAACCTACAGGTAATGCTACCTGGAGGACAGAATTATGCGTATGGACTTCGTCATCAGATGAAGAATCTCGTTAACAAAGTGAGCCCACCTCCTCACAGGGAAAGAGAAAGACTGAAGGCTGGAGACTTCATTGCAGGAAACAAGGAACAACTGGACATTCTACACAGGATGGGAATCCGAATTCAGACAATGACAGATGGAAGAGTCCAGTTACTGCACACAGCATCTGAGGCTGCCAGTCCTGCTGATGCCGAGGATGGGATGAGGTTTATGCAGGAGATGATAGAGTTGTCAAAAACACAAACACAGGAAGGCTCAGCACAACATGATCCAATGTTTGTCAAAGTGTTGTCACCAAACTTCTCTGGTCCCTCTCTGTTTAAAGCAGGACCTGCTCAGTTTGGATACAACCTCAAAGAGTCTCCACCAGTTGATGGACAGTTAGCTGTTGCCAGTCCTTTCAAAGCATGTACCACTCTGATGAACCCAAATGAAGTGTTTGGTAAAATAGTCCTGTTAGAACGAGGTGAATGCATGTTTGTTGACAAGGCAAGAAATCTAGAGAAAGCTGGAGCTGTGGGTGGTATTGTTGTTGATCACAATGAAGGGAGCTCGGTGGAGAGCCAGGCCTTGTTTGCGATGTCAGGGGACGGGAAAAATGACATAACAATTCCCATGGTGTTTCTCTTCGAAAAGGAAGGCTCTCAGTTGATCAGTGCTGTACAGGACATGGGTGTGGTGCAAGTGTCTTTGCAGGATTCGAATGCTGAAAAAATACTACAACCCTTACCACCAGATGGCTCACAACCAGAGGAATCTGGAGGTAGTCCTTACATACCAGATCAAACTCCTCCATATCACAATGCTCCTATGAGAGGAGGTGACCAGGAGCTCCCAGTCTCCTTCCAAGTTGAATCTCGGCGAGTACACATGAAGGTGAAGGTCTCAGAGGGGAGTGGAAAAAATGAAGTGTTTAGTTCAGTTGATACAGATAATGATGACAGAATTCTCAAAGTTGTTGAAAGACCAGATGGATCGATACATGTTGGTTTCAGTGTGGATGACGACGATGAGGAAGATGATAAGGTTAAGAAAGATGTTAAGTTCAATGATATTTATTCCAGAATCTTGAAAACTTTGAGAGAGAAGACCAATTTTGACACTCTGACTGACAGAAGTGAGTACTTGAATGTTATTGCTCGTTTTCTCGAGTCATCACACGTTGGAATTGGAATGGTGGACAGCACACTGCGAGAGTTGATAGAAAAACTTGCCTCAGAACTGATGAAGGAGAGACAGCCCTCGAAACAGACTCAGAGAGTGGAAGACGGAAGACATTACGCATCACAGGAGGACTTTGCTGAATCTGGAAGTCATTTTTCTAAACTGAACACAGATGTCAAACAGTCTGAATATTTTAAAGGTCACATTCAACAAGACAGCAGTGTGAACGACCATCAAAAATCCGAGTTTACAGATGAACAACAAAGTAGAAGCAGTTCAGATGTTGCCGAATCGGCACAGACAGAGTCAAAGGTTGAAGGTTCGTCAGATTCAGTGGTTACTTGGTCTACACAACACCTGATCATGACTCGGAAAACCCGTATGGAGCAACCATTGATGATCATGGGATTTTAAATCTAGTTATTGACAAAGAAAACAAACATGACGAGGAATCGGTAAGTAGACGAGAAAAAAGTGAAAGTGGAGAAGAATCAACTTTTAACAAAGGAGAATCACTGCATCATGGTGATCATGTTGTCAGAGAAATGAATCGTTGATGAATCAGAACAAAACCATGACACCATTTCTTTAGAAAACACAAAGTTTAGCCAAACATCTGACACAGAGAGTGGCAAAATCAGGACAGATAGTGATTATAATAATAATGATCAATTGAAAACAGATAATGATGAATTGAGGACAGGAAATGATAAATTAAGGACAGGTGATGATTACAAAATGAGGAGAGGTGATGATAACTTGAGGACAGGTGATGATTATAATTTAAAAACAGGTGATGATAATATGAGGATAGGTGATCATTATAAATCAAGGACAGGTGAAGAGGAAGACATGGATAGGACTAGTGATAAATCTGAGCACAGTTCGAGAGATGAGTTATAGAAATGTTAATACTGTTTCATCATTATGTGAGTGTGTCTGTGCATTAACCTGAAAGCTGAAGGAGCCTTGTTCTGAATGAGACACCAACCACTAATGAAATAGTCCATCACACTTTTACAACATGCCCTGTTTTCAAATGAGAGTATCTATGGAATTTCTTAACTCTGCCAATAATAATTATTAATAATGAAAATGCAATTACTGTAAATTATTATAAATTCATAAACATTTAACAAACTACGGTTTATGGTACATTATTTTTATCATAAATTTATGCGGAATATTTAAAAAAAATATATATTTAAATCAGTCATGGGCAAACTGCTGCCAACATTAATTAAAATTTTGTTTGTCTCATTTCATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan
PF02225	PA	PA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR003137	Domain	PA domain	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR044674	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004559	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:1904380	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf101_2.17 global RNA-seq network