Gene detail

Detailed information of CsqKR_Scaf1012_0.5 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf1012_0.5	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	chr7	19825087	19837846	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf1012_0.5

TATCTGGTAGACATAAGGTGGTTTAAACAGTGGAAAAAATTTGTTGGTTTTGAATCATGGGACAGTGACCAGGCAGGTGAAGAGAGTGCAAATCCAGGACCAATAGATAATTCATCTTTACTTAAAGAAGATAACAAAACATTAAAAGAACATCTTGTTGATGATTTGGATTACATACTTTTGCCTGCTGAGGCATGGAACAAACTGGTTGCCTGGTATGGGACAGTTGAAGGACAGGAGTCTATTTCACGCAAGGTCATTGAGCAGGGGATGTTTGTCAAACATTGTAAAGTGGAAGTGTACCTTCTCGACCTGAAGCTTTGTGAAAATTCTGAATGCAACAAATATGTGAACAAGCAGTTCAGTCGAACTGATACCATAGATGCTCTGGAAAAGGAAATGAGGCGAATGTTTGACATTTCTGATGATAAAGAGGTTCGTCTGTGGAATCGCTACATGAGCAGTACATATGAACATCTGAACAAACCAGACAACACACTTCAAGATGCTGGTCTCTATCAAGGACAGGTGATAGTTATTGAGCAAAAAAATGATGATGGAACCTGGCCTAGACAAGCAAAGAGCACAAGTAGTTATGGTTCTGGTCATGACAGGTCATACACAACAAGATCAGGTGGTGGTTATGGCGGCAGCAGTTATGATAGTGGATACAATAACTATGCAGGTACAAGTGGCTGCTACAATGGCTATGAACCAGGTAAAGGAACAGCTACACCAGGTCTCTGTGGTTTAGCCAATCTCGGGAATACGTGCTTTATGAATTCATCTTTACAGTGTATGAGCAATGTTCCCCTACTAACAGATTACATGTTAAGTGATCGATGGGTTAATGAAGTAAATGAAGACAACCCTTTAGGAAACAAAGGTGAAATAGCCAGATCCTATGCTGAGCTTATCAAAACAATTTGGAGTGGTAAATACAGCTACACGGTGCCTAGAAACTTCAAGGTTGCTGTGGGTCGTTTTGCACCACAGTTTTCAGGTTATCAACAACAAGATTCCCAAGAACTAATGGCTTTTCTTCTAGATGGTCTACATGAAGATCTGAATCGTATCCGAAGCAAACCATATGTAGAATTAAAAGATGCAAATGGCAGACCAGATGAGATGGTTGCAAAAGAAGCTTGGGACAATTACAGAAAAAGAAATGATTCTATAATTATTGACATTTTCCATGGACTTCTAAAATCAACTGTTCATTGCCCAGATTGCAACAGAATTTCTGTAACCTTTGACCCCTTTTGTTATCTTTCATTACCACTTCCTATAAAAAAGGAGAGACAGATGGAAGTGTTTTGGGTCCCTCTTGCCCCTGAGGCTAAACCCATACAATATAAACTAACAGTGCCTAAAATGGGAAGTGTAGCAGATCTTTGTGCTTCTTTGTCAGCATTTGTGCAAGTTCCAGTTGATCAGATGTCAGTGACTGACGTTTACAACCATAGGTTTCATAGATTGTTTTCTCCTGATGATGGACTCAATCACATGCTTGACAGAGATGACATATTTGTATATGAAGTGCCTGTTAATACTGCTGATGATTCAAATACAATGATTGTACCTATTTATCTCAGGGAAAAAAAAACTGGGGCTAATGACACCTATGTGAGTACTAACCAGCTCTTTGGTCAGCCTCTTCTTCTTCCTGTTCCTAGAGATTCATGTACATATGAAGATCTGTATGAACTCCTCCTACGTAGAATGTCCCGGTACATTCAGAAACCTGATCCTGAAGACAAATGGTGGGTAAAAAGTAAAAAAGCTACAAATGACAATGAACCTCCAGTTCGTTGTGAGATTGAGGTGAAACAAGAAATGAACAAAAATGAATCTAGTGTTGACCCACAAGTACCAGAAGAATTACAAGTGAATGGAGAAAATGCAAATTGTATGGATGTTGGAAACAGCGATGAGGAGTTGGATAACAACACTAACGGCAAGATGGTTGGCAGTGAAGAAGAAGAAGAACCAGAGCAAGAGGAAAAATTTCGTCGCTTGTTTACTTTTACAGCTGTCAACACATATGGCAGCACAGAAATGGGCAGCAAGTTAAAGGATGATGGTCAGCCCCTGAAGTTAACAGCAAGGACTTACATAGCAGTTGACTGGGATCCCTTAGCTAAAGAAAAGTTTTATGATGACAAAGCAGCAGAAGAGTTCGAACAACATGAATCGATGAAAAATCGAAACCAGGTGCAGAAACGTCCACCAATTCAGCTGGGAGACTGCTTGAAACTGTTCACTGACTCAGAAAAACTAAGTGATCAAGATCCTTGGTATTGTCCAGAATGTAAGAAACATCAGCAAGCAACAAAAAAATTTGATTTGTGGTCTTTACCTCAGATACTTATAATACATCTTAAAAGGTTTTCATACAACCGTTACTGGAGAGACAAAATTGATGCAGTTGTTGAATTTCCTATTGAAGGTCTTAAGCTGACGGACTACATCCTGGATGACAGACACAAAGATGCTGTTTATGATCTGATAGCTGTGTCCAACCATTTTGGTGGTCTTGGTGGAGGACATTACACTGCTTTCTGCAAAAACAAAGATGACAAGGAGTGGTACTATTTTGACGACTCCAGTGTGACCCAGTCTTCTGAAGATGCAGTAGTGACAAAAGCTGCTTATGTTCTTGTCTACCAACGACGGGTTTTACCTTCATCTTCACTTGCAACAAAAACAAAAACAGCAGATGCCACTACAGAAGTATCAGAGAACAGCACAATAACCAATGGCATTGAGCCTTCAAATGTGTGTGATGGTAATGATGAAATGGACACCTCAACATGA

Transcript

CsqKR_Scaf1012_0.5

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF06337	DUSP	DUSP domain	Domain	Interproscan
PF14533	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan
PF14836	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR006615	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028135	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR029346	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf1012_0.5 global RNA-seq network