Gene detail

Detailed information of CsqKR_Scaf100_5.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf100_5.16	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	chr3	1341630	1349635	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf100_5.16

GAATATTGCACAAGGCGGCGGAAAGCATGTTTGTAGCAAAAGCAATTCCAGCAGAACACAAAGATTTAATTCATGATGTTTCTTACGACTTCCATGGACATCGCATGGCAACTTGTTCAAGTGACCAGTCTGTTAAGGTTTGGGATTTGGGAGAAGATGGACAATGGCATTGCACAGCTAGTTGGAAGGCACACAGTGGGTCAGTGTGGAGGGTGACTTGGGCTCACCCCGAATTTGGCCAGGTCTTGGCCACCTGTTCTTTCGACAGAACGGCGAATGTGTGGGAGGAGTTAGTAGGAGAACATGGCAGGACGGGGGGAGGGCAGAGTCACTGGGTGAAGAGAACAAGTCTTGTTGACAGCAGAACATCAGTGACTGACATCAAATTTGGTCCAAAGTTCCTAGGGCTTCAGTTGGCAACGTGTTCAGCTGACGGGATTGTTCGTATTTATGAAGCAGTAGATGTTATGAATCTCAGCAACTGGCCGCTACAACATGAGATTAGCAACAAAATGAGCTGCAGCTGCCTGTCCTGGAATCCATCAAGAGTTCATCCACCAATGATAGCTGTTGGCAGTGACGATGTTAACCCAGCAGCAGGTGGAAGAGTTCAGATTTATGAATTCAGCGAGTCTACCAGAAAATGGAACAAAGTGGAACACCTCATGGTGACAGACCCAGTCCATGATGTTGCCTTTGCAGCTAATCTTGGTAGATCCTACCATCTTCTAGCTATTGCTTCCAAAACACTGTCCATCATTTCTTTGAAACCTCAAAGAAAAGACGCACTTCTTGGCACATTAGGAGAAAGCAAATTTGAAATGAGGAAAGTGGCCAACTTTAACGATCACGACACTCAGGTGTGGAGGGTGTGTTGGAATGTGATAGGAACAGTACTTGCATCATCAGGAGATGATGGGTGTGTGCGCCTGTGGAAAGCTAACTACTTAGACAACTGGAAGAGTATAGCTGTTCTGAAAGGAGACGGGACCAGGCAGGACGGCGAAAGGAACTTCAACACCACTTCAACTGTTTTAGCTGCAGCATCGGCAGTGAGTGGGAGTCACATGAGGTACTACAGGGACTACACAGTGACACCCGTCACTAGTGCATCACAGGTCGCGTGGCACTGACTTTTTTTTTCTTTTTTTTTTTTACCTACAAATGCACACGTCACTCGAGTTTATATTAATTTGGTTGCAGTTTCGTTGTTTTTTTTTCTCATGGTCAACACCAGAAGCAACATGACAAGTCAGTTGTAAACAATAACAGGTTTATCTTGATGGAAGACTGTTTGATGATAGTGTGTTGTTGTTTGATTTGCATGGAGTAATTCTAAGGTGTATTTTTGTCAGCGAGTGATGGTGTTGAAAGAAAAAGAAATGGGGAAACTGAGAAAACAGAGGAAAGAGAGGGAGGGAAGGTTGGAGAAGAATAAGAGGAGAAAGAAAGAGCATGTGTATGTGTGTGTGTCTGTACATGTGAGGGAAAGCCAGAGAATTTTTAAGCATAAAGGATGTTATTATTAAGTAAAATGTATTTCATTAGTTTTGATGAAATTCCTAGGATAGAAATATTTACAGGAAGATGTTTGTAGTTCTTAGAAATATGGAAATTCTGAATAATTTAAATTTTAAAATTTTTGTCATTGAAGAAGTATATAATTCTGTGATGTCAAATGAAATAAAATAATTTTTTTTGTTAAATAGAATGAAATATTACTCTAATATTGTGATGGCAGAAGTTAGCCACTACAAAATTTTTCAGAAGGTGCTGTATGAAAGTATTGACATTTTTTTTCTTCAAAAATGTTTTTGAATTTAACTTGAAGAACCAAACAGTCATGTGAAATATGTGTGTAAGTGTTCTGAGCAGTATATGCATGGTTAATGTAATATCTCAATTATTGGCCTGTTGTGTTAATGTGTCAGTGTGAGAAAGTTATTAATTTTTTTTTTTTGTGAATGTTATGTATTAGGTTATTTACCTGCACAAATAAAAATAAATAATAAAACAAAAATAGTTTTGGTATTACAAGTTATTGAAATACTTTAATTCATACCAAAATGAAATTTGTTTGATAATATGTAAAATTAATAATATGTTTTATTCTAATAATTTTTTTTTATTACATATATGAAGCAAATTTTATTTCAGTTTGACCCTATGTTCTAAAAAATAAAATGAAAATTAAATATATAATCATGGTTATTGAAATTTAATAGGAATATTTACATTTTATAAGATGACTATTACTTCATTTTGCCTGTAGTCATTACATTCTGAAGTATCTTTCTTTTTTAATTTCTTTTAACTTTTTTCATTTTTATTTTTTCCTTATAAAATTACTGAAAAAATAACTACCCTCAACAACAACAACAACAACAACAAAAAATTAAAAATTAACCCAGATAAAACAATAAAAAAGTTTTTTTAAAAGTTCTGTCAAAAAAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037363	Family	Sec13/Seh1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035859	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf100_5.16 global RNA-seq network