Gene detail

Detailed information of CsqKR_Scaf100_0.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf100_0.13	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	chr3	785775	803986	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf100_0.13

TAGGTTTTATTTCACTGACTGGTGCTCAGTCTCCCGACCTCACCCTGGCGGGGCGCAGCTCCAGCCCCAGTGCTGTGACCTATGACCCCATAGAACAGATTGTGTATTGGAGTGATGTAGAAGAAAATGCAATCTATCGAGCTAATCTGGATGGGTCAGAGAGAGAAATCTTTTTAAACTGTACACATGGAATTGGCATTGTTGATGGCTTAGCAGTGGACTGGGTTGCTAGGCGACTGTATTTTACCAACATGGGACAGTCAGCCCCGTCAGCTGATGGAGCAGTCTACTCCTGGCATCGTATTGAAGTAATCAGTTTTGATGGTAAGATGAGAAAAACTGTCATCAATGAAATTGAGCGACCTCGTGGCCTTGACCTTGACATTAGGAATGGATTTTTGTTTTATGGAGACTGGGGCAGACAGCCAAAGATTGTTCAGACTCTACTGGATGGATCAGAGGAAACAGTCATTCTCAGTTCTGGATTAAGCAATCCAAATGGATTAACATTCTACAATGGCCGACTGTATGTTGCAGACTCAAACTACAACAACCTGACGTCATCACCTCACCTCATGGTGTACGATGTCGCAAAGTCCAGCTGGGAACAGCTTAAACTCAGTGCTAATGTGTCGTTACCAATGGGTCTTGCAGTGAGAGGTGACACACTTTACTACACAGACTGGGTATCAGCATCGGGGCCCAGACAGGGATACCTCAAATCCTATGACCTTCGATTTGGAGTGGATAACAATGTCATTCTGAATGGCCAGAGACCCACAGGCTTATTCTACACCCCCCTGGCCAGGAGACAAGAACCCTCTGATGGGTCCTGTGACTCTGCTATGTGCAGTGATGAGTGTGTAAGGATCCCCTCCTCCCCAGCCAAACCTTTCACCTGTCAGTGTCCAGACCAGTCGGCCAAAATCCTGTCCAGCAACAAAGCATCCTGCGAGCGTCCTTAAAATTAATTGTAATTTTTGATTGAACAATTGAAGCTGATGAGTCTTTTGAGTCCAGGAGGGGCTAAAACCTTTTTTCATATATGTATAATAATACAATTTTTATCAACACATTTATGAACAGATTAAAATAATTTATTTATTCACCAAAAAAGCTATTTTCTCCTCTCCGTTCAACGACATTCAGCCGACTGTTGTCATAGAAACCGAACATTTCATCGACGGTCTGACGGTCGACACAGACCGCCAGCGACTGTTCTGGACCGGCTACAACGACAACAGCACCGGGGTCATCGCCAGAATGAATCTACAGCGTGGACGATCATCATACAAAGAAATACTGACCAACCTTGCTCACCCTAGAGCCATTCTGCTCATGTCAAAAAAGAAGTGGCTGTTCTGGACTGAGTATGGTAAAAAGGACTCACCTGCGAGTGTTCGAAGGAGTCGGTCGAACGGTAAACACGTCAAGGTGATCATGTCATCGCGGATAGTGTGGCCCAACGCACTCGCCAGTCAGGGTGACCTCATCTATGTGGGTGATGCTTTCGGCAAAGTCTTCTCCATGAAATATGATGGCAGTCACTTGAAAAGACTCACATTTCTGGCTGGTTCGGTGGTACATGTGTTTGGAATGGTTGTCTACCATAACGTATTAATCTACTCAGACTGGACCACAAAGGGAATCTACATGGTTGACCTGGTAACCGGAGACCATGAAACAATGGCATCTCACTTGTCCAGACCTTCCAGTGTTGTTCTGTACCATCCGTCAGATCTCTCAGTTCACAACCAGTGTGTTGAAGGACATCAGAAGTGTAATCATTCCTGTGTTCCTATTCCACGATCCTACCACTGCACCTGTCCTGTAGGATCCAAGCTGGCATCTGATGGAAAAAGTTGTATTCAAATGCCCAGCCCCTGGGAGAGAACTGAGGAGACCCTGTGTTCACACAACTGTGGGTACCACGCAGTCTGTGCTCAACTGATCCCCACCCTCAGGTACCAGTGTGTTTGTCAGGCTGGTTACCAGGGAGATGGAAAGTCTTGTACAGGTTGTCCCAAGGATTCCTTCAAGGCAAAACTGGGAAATGATTCCTGTCTGCCATGCAGTCCAGGAATGACAACTAAAGGAATTACCACGGCAACTGAATGTTTTTGTGAAGACCCAAATTTGTATCCTGTGAATGGAGTATGCACAGAAACCACAGTAAAAATGGAAACAACTGCAGCTACCACAACCAGAGTCACAAAGCCATCCATTTTTTACAACCAGACACTCAGCACTTTCATTATGGAATCAGAGGTCACGACAGATGATGTCGTTGTCATGACAACCCAGGATGAATTTGATGAAACTGTTTCCATAACAACCGAACCACCAATGGAGCCAATGGTGATACCTTTTGAAGATACAGTAGTGGAGAAAGAAGTTATTGGAAAACCTTACTTTGATGGTTGTCCCCATGGTGATGTCATGGTGATGTCACTATCTCCACAGACCAATGAAGTCAAACTGCCTCTGTCATCATGGATTGCCAAGGATTCCTATGGCAACCGTCTGCCAATCACATCAAACTATCCAATTCGCGAAGACAAGGTGATACTGGAGTGGGTAGCCAATGGTCAGGAGGGAGAACAGACAGTCATTTTTCAGGCCGAGGACAACTGGAAACAGAAAACTACTTGTCAGTTCAAAGTGCTTATTGATGATCTGGTGCCACCGAAGTTTACCTACTGTCCCAGTGATTTGGTTATAAAAACTGAACGCCATGCGGAAAGAGTTCTCTTCCCGAACCCTGTTGCTGTTGACAATGTGGGCGTGGTGTCGCTGACGGGGACTCACAAGTCTGACTCTGAGTTTCAGCAGGGAGCGACGGTTGTAAAACACACAGCAGTCGATAAAGCTGGAAATGTAGCCACGTGTAATTTCACTGTCACCGTTATTCAAGCGTTTGTCTGTGGTCGCCCACCAGAGAAGCAGTGCAACCACGCCGTCAATCCCGTGGGCATGTTTGGCAGATCGTTCAACTGCATGATTGTGGAAGACGTCGTCAAACTGACCACACTGATGACGTCGCAGGAACCTTGTCTGCGTAAAAGACGACCGACGTCTGTACGTCAGGAGTTCAGTCTGAGTTTCAACGGACCGTGCGACCCCCATGATACGACCCTCATCTCTGAACTCTCCACAGCCGTCATGGAGTATCTGGAGGCACGGAACCTCTGCAAAAGTGGGCGGAGTGCAGCTTCAGCAACATGACCATCCACTGTGGCCCTGACGTCGTCAAGAAGAGAAGATACGTTGAGGACAAGTTTGGAGTGAAGTGGAACATCACCATTGACAACAGTACTGGGTTCAGCAGGTCGCAGGTGGAGTCGATTCTGTTCAACATAAAGATTGAGTTGATGAAACTTGCTGCTGCTCTCTCCATCGTCGTTGACAAGCAGCACTACACCACCGTCCCTGGCACCGTGGTGACGTCACAGCTGCAGTGGGTGTGTCAGACAGGGGAGATGGTCTATGAGGACGGGTGTGTGGCTTGTCCAGCAGGAACCTACCTGAATGTGACAAGAGAGAAGTGTGTTCTGTGTTCCCGTGGTTACTACCAGGAACTCAAAATGCAGACAGAGTGCAATATGTGTTCTGAAGGATTCACCAAAGAGGAGGGTGCCATAACTGTAAAACAATGTGTGACATTCCCATCGATTGACGAGATGAGCAAGTTTCTCATTATAACAGCCTGCACCTTCGGCTTCGTCTTCCTCTGCATGGTGATCTTCATGTACACCCAGTACAGGAGACAGCAGAAACAAGCTCAGAAAAGCCTCATGCTGTCCAACTCCTCCCGCTACATGACCCCCAACGTCTATGTCGCGCCGCCGCCGATGCCCAAGTCAAAGAACATGTTCGACGAGCCTCGCGACTACATCGGCTCCCACGACTACGAAGACATCGACGGAACGATAAACAAGTCAAACTTTGACGGGTTTTATCGCCTGCCTCGAGTTCACAGGGATTCTCTGAATTCGTTTAAAACTGCCAGCGACATAATTTATCGAATTCCACCGTCACCTTCGCCCAGGGAGTCGACGTGCACCAACTCGTTCAAGACGTCGGACGACACACTGATTCCCAATTCTCCGATGGAATCGGCCAAATCGTTCAAGCTGTCCAACGACGGCTTCTACAACTACAAACCTCCGATGTCGCCGAGGACGTCATCAACAGCGAACAATTCTTTCCGATCGTCGCCCGATTCCCCGTACAAGAGCCCCCAGTCGGCACGGGAGAACTACATGGGTCACGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf100_0.13 global RNA-seq network