Gene detail

Detailed information of Csp24G004710.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp24G004710.1	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Chr24	11128834	11181619	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp24G004710.1

ATGGCACCGGTATCAAACCCAGACAAAGACATGGACGGTCCGGACGGCGATGATGGAGGCGATGCCTGTGGTCTGGCAAGGTCTCGCTCCAGGCGAGAGAAGAGGGAGAAGGTGGGGAGGAAGTCTGCACTGGAGCAGCTTAAGAAAGCCAAGATGGGGGAGAAGATAAAATATGAGGTGGAGAAGATGACTAGTGTTTATGAGGAGGTAGATGAGCAGCAGTACTCGAAGATGGTTCGAGACAGACAAGAGGACGACTGGATTGTTGATGATGATGGAACAGGATACGTGGAGGATGGAAGAGAAATCTTTGACGATGATTTGGATGAGGATGTAGTAGAGAAAAACAAAGGTAAAGCAGGTGCTAAAGGAGCAGACTCCAAGAAAAATATGAAGAAATCTACCGTGGCAAAGCCCAACACTATTAAGAGCCTCTTCATGAACACGAATGTCAAAAGACCTGCTGAGAAAGATGTTGACTTGTCCAAAGATGATCTGTTAGGAGATATCTTACAGGACCTTCACTCTGAGAAGCCGACTCATCTGACTCCTCCACCCGTTGTCACTCTGAAGAAAAAGAAGTCTCTTGGTTCCTCGATGAATCCCTTTTCCATCAAACCTCAGATGAAAAAGGAGTCACCTTCAGCATCAGGGTTAAAAGCCAAAGTAATCAGGCCGACGCTTTCTGACCCGATCCCAAAGTCATCAGACCACCTCCCTCCCCCCACACCTGCACCTCCTGTGGAGAAACACAGGACAAAAACGGAGGAGCGGGATGAAGATGAAGTGAGTGATTCCCTGGCATTTGATGAGGTTGACTTCGATGAGCCGATGGAGGTCGTGCTCGAAGAGGAGAAGCCTCAAATGAAAGATACTGAACCCAAAGCAGCTGCAGAGGTGGCGCTTAAGGTGGAGCCCAAAGCAGAGCCTCAGGTTCCTGTCTTATCCTCCAGCACGATCGGAAGCTCATGGGGACAAGAGGAGGGAGATGGTGCCAGCGAGGCTCAAGTAGAGATACAGGTTGATTCCAGCCAACTTCCGCTGGTGGAGGGGGCAGACGGGGACCAGGTTTTCCGCTTCTACTGGTTGGATGCCTTTGAAGAACCTTATAGCCAACCAGGAGTGGTGTACTTATTTGGAAAAGTATGGATCGAGTCTGCAAAGTGTCATGTCAGCTGCTGTGTTTCTGTCAGGAACATTGAGCGGACCATGTACTTCCTGCCTCGCGAATATAAAGTGAACACCAAGACTGGAGAGGTGTTGGACACTCCTGTAGGAATGATGGACGTCTACCAGGAGTTTAACGAGCTCTCTGAGAGGTTCAAGATCATGAAGTTCAAGTCAAAGAAAGTGGAGAAGAACTACGCTTTTGAAATTCCAGATGTGCCCAGTCAGTGCGAGTACCTGGAAGTCAGATATTCTGCTGAGTTCCCTGCACTGCCTATGGACCTTAAGGGGGAGACCTTTTCCCATATTTTTGGAACAAACGCTTCCAGCCTGGAGCATTTCCTCCTCAGCAGGAAGATTAAAGGGCCGTGTTGGCTGGACATTAAGACCCCACAGCTGATCGGCCAGCCGATCAGCTGGTGCAAGGTCGAGGCTCTGGCCCTGAGGAGTGACCTCGTCACTGTGGTCAAAGATCTGTCGCCTCCACCCATCACTGTCATGTCCATCAGCCTCAAGACTGTCCAGAACCCCAAGACTCACCAAAACGAGATTGTGTCCCTGGCAGCTCTGGTCCACCATCAGTTCCATATGGACAAAGCTCCACCTCAAACTCCATACCAGACTCATTTTTGTGTGGTCAGTAGACCGTCCGACTCCATCTTCCCCTATGACTTCAAAGAGGCGGTGAGGAAGAAGAATGGGAAAGTGGAGATAGCTCCTTCAGAGCGGACTCTGCTTGGCTTCTTCTTGGCCAAGATGCACAAAATCGACCCTGATGTGCTGGTGGGTCATGACATCTTTGGTTTTGACCTGGAAGTGATTCTGCAGAGGATCAATGTGTGCAAGGTTCCCCACTGGTCCAAGATGGGACGCCTCAGGAGGGCAAATATGCCCAAACTAGGGGGTCGTAGTGCGTTTGCAGAGAAGAGCGCTACCTGTGGCCGTCTGGTGTGCGATGTGGAGATCTCAGCCAAGGAGCTGATTCGCTGTAAAAGTTACCTTCTGACTGAACTGGTTGCACACGTGCTGAAGATGGAGAGAGCCACAGTCCCTCAGGAAAACATCAGAAATCTTTACAATGACTCTCCTCACCTGCTCTACCTGTTGGAGTTGACATGGACAGACGCTAAGCTGATCCTACAGATGATGTGTGAGCTCAACGTGCTACCACTGGCCCTGCAAATCACCAACATCGCTGGCAATGTCATGTCTCGTACTCTGATGGGTGGTCGCTCCGAGAGGAATGAGTTCCTCTTGCTTCATGCCTTCCACGAAAAAAACTACATCGTCCCCGACAAACCCTCCTTCAAAAAGGCCCAGATGGAAATGGTTGATGGAGGAGAAGATGTGGATGCAGGGAAAGGCAAGCGGAGGAAGAAGGCAGCCTATGCTGGAGGTCTGGTGCTGGATCCTAAAGTTGGTTTCTATGACAAATTTGTGCTGCTGCTTGACTTCAACAGCCTGTATCCCTCAATCATCCAAGAGTTCAACATATGCTTCACCACTGTACAGAGGGAGGCTCAAAGCACAAAGAAGAAGAACGAGCAGGAGGAGCCAGATGAGGTTCCTGAGATTCCAGATCCAAACCTGGATATGGGAATCCTGCCCAAAGAAATCAGGAAGCTGGTGGAGCGGCGTAAACAGGTTAAACAGCTGATGAAACAGCAAGACGTCAACCCAGACCTCTACCTGCAGTACGACATTCGTCAGAAGGCTCTCAAGCTGACTGCTAACAGTATGTACGGCTGCCTGGGATTCAGCTACAGCCGCTTCTACGCCAAGCCGCTCGCTGCCCTGGTCACACACAAAGGTAGAGAGATTCTGATGCACACTAAAGACATGGTTCAGAAGATGAATCTGGAAGTCATCTATGGAGATACCGACTCCATTATGATCAACACCAACAGCAGGTCTCTGGAGGAAGTCTACAAACTTGGCAATAAGGTGAAGGCAGAAGTAAACAAGCTCTACAAACTGCTTGAGATCGACATCGATGGTGTCTTCAAGTCTCTTTTGCTGCTGAAGAAGAAGAAGTACGCTGCCTTGGTGGTGGAGAGCCAAGGCGACGGACGATACAGCGTCAAGCAAGAGCTCAAAGGCTTGGACATCGTCCGTAGAGATTGGTGTGGCCTGGCCAAGGAATGTGGCAACTATGTGATCGGTCAGATCTTGTCGGACCAGAACCGGGATGTCATCGTGGAGAACATCCAGAAACACCTTGTGGAGGTGGGAGAGAAAGTAACAGCGGGAGACATACCACTCAGCCAGTATGAGATAAACAAGGCTCTTACTAAAGATCCTCAGGACTATCCAGATAAGAAGAGCCTCCCTCATGTCCATGTGGCACTATGGATCAACTCCCAGGGTGGTAGGCGGGTCAAAGCTGGAGATACAATTTCTTACATCATCTGCAAGGACGGCTCTACACTGGCAGCCACTCAGAGAGCCTATGCTCTAGAGCAGCTCCAGAAGCAGGAGGGTCTCAGTCTGGACACTCAGTATTACCTTTCCCAGCAGGTCCACCCTGTGGTGTCCCGTATCTGTGACCCCATTGAGGGCATCGATGGCGTGCTCATAGCCTCTTGGCTAGGTCTGGACCCGAGTCATTTCCGGTCTCAGCAGCAGTACCAGAGGGAGGAAGAGGCTGATGGCACGCTGGGAGCTCCAGTCCAGCTGACTGATGAGGAGCGCTACAAAGACTGTGAGCGGTTTACCTTCACCTGCCCTCAGTGTGGCACTGACAACATCTACGACAGCGTCTTTGAAGGAGCTGGGTTAAGGTTGGAGCCTAGCTTGATGCGATGCTGTCACAGCCCCTGTGCGAGCCGCCCCATCGACAACGCTGTCAAAATCAGCAACAAACTGCTGCTGGACATCCGTCGTCATATCAAAAAATACTACACAGGCTGGTTGGTGTGTGAGGACCAGACCTGTCAGAACAGGACCAGGCGTTTGCCCATCGCCTTCTCCCGCCACGGACCCATCTGCCCTGCCTGCACCAGAGCTACTCTCAGACCTGAGTACTCCGAGAAGGCCCTCTACAACCAGCTCTGCTTCTACAGGTTCATCTTTGACTGGGACTATGCGGTTGCCAAAGTACCCCAGGGTGATGAGAGAAATCGCGCAAAGCAGTGGAGCAGAGAAAAAGAGGTGTATCGCAGGCTGAAGGAAGTGCCAGACAAAGCCTTGGCCACCAGCGGATACTCGGAGATTAACCTGGCCAAACTCTTCCAGGCCATGTCCTCCCTCAAGTAA

Transcript

Csp24G004710.1

CGCGGGCTGTTCGGTTATTGTGCTGCATCGCTTCCGTGTTGAGTAGCTGTCAGTGAGCACATTCAGGACAAAAAGTTAAAGATATGGCACCGGTATCAAACCCAGACAAAGACATGGACGGTCCGGACGGCGATGATGGAGGCGATGCCTGTGGTCTGGCAAGGTCTCGCTCCAGGcgagagaagagggagaaggTGGGGAGGAAGTCTGCACTGGAGCAGCTTAAGAAAGCCAAGATGGGGGAGAAGATAAAATATGAGGTGGAGAAGATGACTAGTGTTTATGAGGAGGTAGATGAGCAGCAGTACTCGAAGATGGTTCGAGACAGACAAGAGGACGACTGGATTGTTGATGATGATGGAACAGGATACGTGGAGGATGGAAGAGAAATCTTTGACGATGATTTGGATGAGGATGTAGTAGAGAAAAACAAAGGTAAAGCAGGTGCTAAAGGAGCAGACTCCAAGAAAAATATGAAGAAATCTACCGTGGCAAAGCCCAACACTATTAAGAGCCTCTTCATGAACACGAATGTCAAAAGACCTGCTGAGAAAGATGTTGACTTGTCCAAAGATGATCTGTTAGGAGATATCTTACAGGACCTTCACTCTGAGAAGCCGACTCATCTGACTCCTCCACCCGTTGTCACTCTGAAGAAAAAGAAGTCTCTTGGTTCCTCGATGAATCCCTTTTCCATCAAACCTCAGATGAAAAAGGAGTCACCTTCAGCATCAGGGTTAAAAGCCAAAGTAATCAGGCCGACGCTTTCTGACCCGATCCCAAAGTCATCAGACCACCTCCCTCCCCCCACACCTGCACCTCCTGTGGAgaaacacaggacaaaaacgGAGGAGCGGGATGAAGATGAAGTGAGTGATTCCCTGGCATTTGATGAGGTTGACTTCGATGAGCCGATGGAGGTCGTGCTCGAAGAGGAGAAGCCTCAAAtgaaagatactgaacccaaagCAGCTGCAGAGGTGGCGCTTAAGGTGGAGCCCAAAGCAGAGCCTCAGGTTCCTGTCTTATCCTCCAGCACGATCGGAAGCTCATGGGGACAAGAGGAGGGAGATGGTGCCAGCGAGGCTCAAGTAGAGATACAGGTTGATTCCAGCCAACTTCCGCTGGTGGAGGGGGCAGACGGGGACCAGGTTTTCCGCTTCTACTGGTTGGATGCCTTTGAAGAACCTTATAGCCAACCAGGAGTGGTGTACTTATTTGGAAAAGTATGGATCGAGTCTGCAAAGTGTCATGTcagctgctgtgtttctgtcaggAACATTGAGCGGACCATGTACTTCCTGCCTCGCGAATATAAAGTGAACACCAAGACTGGAGAGGTGTTGGACACTCCTGTAGGAATGATGGACGTCTACCAGGAGTTTAACGAGCTCTCTGAGAGGTTCAAGATCATGAAGTTCAAGTCAAAGAAAGTGGAGAAGAACTACGCTTTTGAAATTCCAGATGTGCCCAGTCAGTGCGAGTACCTGGAAGTCAGATATTCTGCTGAGTTCCCTGCACTGCCTATGGACCTTAAGGGGGAGACCTTTTCCCATATTTTTGGAACAAACGCTTCCAGCCTGGAGCATTTCCTCCTCAGCAGGAAGATTAAAGGGCCGTGTTGGCTGGACATTAAGACCCCACAGCTGATCGGCCAGCCGATCAGCTGGTGCAAGGTCGAGGCTCTGGCCCTGAGGAGTGACCTCGTCACTGTGGTCAAAGATCTGTCGCCTCCACCCATCACTGTCATGTCCATCAGCCTCAAGACTGTCCAGAACCCCAAGACTCACCAAAACGAGATTGTGTCCCTGGCAGCTCTGGTCCACCATCAGTTCCATATGGACAAAGCTCCACCTCAAACTCCATACCAGACTCATTTTTGTGTGGTCAGTAGACCGTCCGACTCCATCTTCCCCTATGACTTCAAAGAGGCGGTGAGGAAGAAGAATGGGAAAGTGGAGATAGCTCCTTCAGAGCGGACTCTGCTTGGCTTCTTCTTGGCCAAGATGCACAAAATCGACCCTGATGTGCTGGTGGGTCATGACATCTTTGGTTTTGACCTGGAAGTGATTCTGCAGAGGATCAATGTGTGCAAGGTTCCCCACTGGTCCAAGATGGGACGCCTCAGGAGGGCAAATATGCCCAAACTAGGGGGTCGTAGTGCGTTTGCAGAGAAGAGCGCTACCTGTGGCCGTCTGGTGTGCGATGTGGAGATCTCAGCCAAGGAGCTGATTCGCTGTAAAAGTTACCTTCTGACTGAACTGGTTGCACACGTGCTGAAGATGGAGAGAGCCACAGTCCCTCAGGAAAACATCAGAAATCTTTACAAtgacTCTCCTCACCTGCTCTACCTGTTGGAGTTGACATGGACAGACGCTAAGCTGATCCTACAGATGATGTGTGAGCTCAACGTGCTACCACTGGCCCTGCAAATCACCAACATCGCTGGCAATGTCATGTCTCGTACTCTGATGGGTGGTCGCTCCGAGAGGAATGAGTTCCTCTTGCTTCATGCCTTCCACGAAAAAAACTACATCGTCCCCGACAAACCCTCCTTCAAAAAGGCCCAGATGGAAATGGTTGATGGAGGAGAAGATGTGGATGCAGGGAAAGGCAAGCGGAGGAAGAAGGCAGCCTATGCTGGAGGTCTGGTGCTGGATCCTAAAGTTGGTTTCTATGACAAATTTGTGCTGCTGCTTGACTTCAACAGCCTGTATCCCTCAATCATCCAAGAGTTCAACATATGCTTCACCACTGTACAGAGGGAGGCTCAAagcacaaagaagaagaacgaGcaGGAGGAGCCAGATGAGGTTCCTGAGATTCCAGATCCAAACCTGGATATGGGAATCCTGCCCAAAGAAATCAGGAAGCTGGTGGAGCGGCGTAAACAggttaaacagctgatgaaacaGCAAGACGTCAACCCAGACCTCTACCTGCAGTACGACATTCGTCAGAAGGCTCTCAAGCTGACTGCTAACAGTATGTACGGCTGCCTGGGATTCAGCTACAGCCGCTTCTACGCCAAGCCGCTCGCTGCCCTGGTCACACACAAAGGTAGAGAGATTCTGATGCACACTAAAGACATGGTTCAGAAGATGAATCTGGAAGTCATCTATGGAGATACCGACTCCATTATGATCAACACCAACAGCAGGTCTCTGGAGGAAGTCTACAAACTTGGCAATAAGGTGAAGGCAGAAGTAAACAAGCTCTACAAACTGCTTGAGATCGACATCGATGGTGTCTTCAAGTCTCTTTTgctgctgaagaagaagaagtacgCTGCCTTGGTGGTGGAGAGCCAAGGCGACGGACGATACAGCGTCAAGCAAGAGCTCAAAGGCTTGGACATCGTCCGTAGAGATTGGTGTGGCCTGGCCAAGGAATGTGGCAACTATGTGATCGGTCAGATCTTGTCGGACCAGAACCGGGATGTCATCGTGGAGAACATCCAGAAACACCTTGTGGAGGTGGGAGAGAAAGTAACAGCGGGAGACATACCACTCAGCCAGTATGAGATAAACAAGGCTCTTACTAAAGATCCTCAGGACTATCCAGATAAGAAGAGCCTCCCTCATGTCCATGTGGCACTATGGATCAACTCCCAGGGTGGTAGGCGGGTCAAAGCTGGAGATACAATTTCTTACATCATCTGCAAGGACGGCTCTACACTGGCAGCCACTCAGAGAGCCTATGCTCTAGAGCAGCTCCAGAAGCAGGAGGGTCTCAGTCTGGACACTCAGTATTACCTTTCCCAGCAGGTCCACCCTGTGGTGTCCCGTATCTGTGACCCCATTGAGGGCATCGATGGCGTGCTCATAGCCTCTTGGCTAGGTCTGGACCCGAGTCATTTCCGGTCTCAGCAGCAGTaccagagggaggaagaggctGATGGCACGCTGGGAGCTCCAGTCCAGCTGACTGATGAGGAGCGCTACAAAGACTGTGAGCGGTTTACCTTCACCTGCCCTCAGTGTGGCACTGACAACATCTACGACAGCGTCTTTGAAGGAGCTGGGTTAAGGTTGGAGCCTAGCTTGATGCGATGCTGTCACAGCCCCTGTGCGAGCCGCCCCATCGACAACGCTGTCAAAATCAGCAACAAACTGCTGCTGGACATCCGTCGTCATATCAAAAAATACTACACAGGCTGGTTGGTGTGTGAGGACCAGACCTGTCAGAACAGGACCAGGCGTTTGCCCATCGCCTTCTCCCGCCACGGACCCATCTGCCCTGCCTGCACCAGAGCTACTCTCAGACCTGAGTACTCCGAGAAGGCCCTCTACAACCAGCTCTGCTTCTACAGGTTCATCTTTGACTGGGACTATGCGGTTGCCAAAGTACCCCAGGGTGATGAGAGAAATCGCGCAAAGCAGtggagcagagaaaaagaggtgTATCGCAGGCTGAAGGAAGTGCCAGACAAAGCCTTGGCCACCAGCGGATACTCGGAGATTAACCTGGCCAAACTCTTCCAGGCCATGTCCTCCCTCAAGTAAAACAACAACGACACCTACACATCTGTAAAGATGGCGTCGCCAAGATGCTCCGACGTCTGAGTCCGAACCGGAGATCTGCACATTCAGCTGCATCGGTTTTCTGCTATTGGTGTTCGATTATATCTGGATTGGTGATTTTAGGCCTTGACCTCCTGACCCATATCATCTACTCTGACCCTGATGTGAAACCCAATCACACCTCTTCCTTTCTCCACTTTCTTCACATAGACACTCATTGCTTCACCCCATCACCCTGAATCTGTATGGTAAAGGGGGGGGAGTAATCATACTTAAATGACAGccttttgtatgtgtgtatgtgagagagagaaagagagagaaaaagtgacTTGTCCTCAGAGCAGCCAGTATACTCCAAAAGCTGGTAATTAGCCAATGATAGTGACCCTGGCCACTAAGCCCACTGGATGCCTGCAGCGATCGGACACTTGCTCTGATTACCACCATTCatcccgtg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF08996	zf-DNA_Pol	DNA Polymerase alpha zinc finger	Domain	Interproscan
PF12254	DNA_pol_alpha_N	DNA polymerase alpha subunit p180 N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015088	Domain	Zinc finger, DNA-directed DNA polymerase, family B, alpha	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR024647	Domain	DNA polymerase alpha catalytic subunit, N-terminal domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038256	Homologous_superfamily	DNA polymerase alpha, zinc finger domain superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR045846	Domain	DNA polymerase alpha catalytic subunit, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45861	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005658	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006272	Biological Process	leading strand elongation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:1902975	Biological Process	mitotic DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-