Gene detail

Detailed information of Csp24G003840.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp24G003840.1	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	Chr24	8969682	8978034	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp24G003840.1

CTGATCTAGAGCGATCGATCTCCAATCTTCACTACTTGAAGATCTTTGAAGTAGTCACGGGGCGGATCCAAAATGGCGGCAGTTGCAGTGGCCCATCAGTAAAACCGAGAAGCGAGTGAATGAAGTCAGCTGACCTCAGTCTGCTGTCACGCATCGCAGCAACCATCGTTTCTCTCTCGAGTCAGGACAGTGAACCTCCACCTTACAGCCAGACGTCGAACTAATAAATAACTTGTGAAGATGGACATGTCCAAGCTGCCCAAGATCagggatgaggagagagagagccagtTTGGATACGTTCATGGAGTCTCTGGACCAGtggtcACAGCTACAGCCATGGCAGGTGCAGCCATGTATGAGCTCGTCCGTGTCGGCCACAGTGAGCTGGTGGGAGAAATTATCAGGCTGGAGGGAGACATGGCCACGATCCAGGTCTACGAGGAGACATCCGGTGTGTCTGTTGGAGATCCCGTGCTGCGGACAGGGAAGCCTCTCTCTGTGGAGTTGGGACCAGGAATCATGGGGTCCATCTTTGACGGTATCCAGCGGCCGCTAAAGGACATCAATGACCTGACGCAGAGTATCTACATCCCCAGAGGTGTGAACATCGGAGCCCTGAACCGAGACCTCAAGTGGGAGTTTATTCCCAGCAAGAGCCTGCGGGCTGGCAGTCACGTCACAGGAGGAGACATCTATGGCATGGTGAATGAGAACTCCCTCATCAACCACAAGATCATGCTGCCTCCCAAAAACAGAGGCACCGTGACGTACGTGGCTCCGCCCGGAAGCTACGACATCAACGATGTGGTGATGGAGCTGGAGTTTGAAGGGGTGAAGGAGAGGTTCACCATGGTGCAGGTGTGGCCTGTCAGACAAGTGCGACCCGTCACAGAGAAGCTGCCCGCCAATTATCCACTGCTGACCGGCCAGAGAGTGTTGGACGCCCTTTTCCCATGTGTGCAGGGAGGAACCACAGCCATCCCCGGAGCCTTTGGTTGTGGAAAGACTGTCATTTCTCAGTCCTTGTCCAAGTACTCCAACAGTGAGGTCATCGTCTACGTAGGCTGCGGGGAGCGTGGTAACGAGATGTCGGAAGTGCTGCGAGACTTCCCTGAGCTGACCATGGAGGTGGATGGGAAGACGGAGAGCATCATGAAGAGAACGGCACTGGTGGCCAACACCTCCAACATGCCTGTAGCTGCCAGAGAAGCCTCCATCTACACAGGCATCACACTGTCTGAGTACTTCAGAGACATGGGATACAACGTAAGCATGATGGCTGACTCCACCTCCCGTTGGGCTGAGGCTCTTAGGGAGATTTCTGGCCGTCTGGCTGAGATGCCTGCTGACAGTGGTTATCCTGCATACCTGGGGGCCCGTCTCGCCTCCTTCTATGAGCGTGCTGGAAGGGTAAAGTGTCTGGGTAACCCTGAGAGGGAGGGCAGCGTCAGTATCGTAGGAGCTGTATCGCCTCCTGGTGGTGACTTCTCAGACCCCGTTACCTCAGCCACCCTTGGTATTGTACAGGTGTTCTGGGGTCTTGATAAGAAGCTGGCTCAGAGGAAACACTTTCCCTCTGTGAACTGGCTGATCAGCTACAGCAAATACACTCGCGCTCTGGATGAGTATTACGACAAGCACTTCCCCGAGTTTGTGCCCCTCCGTACCAAAGCCAAGGAGatcctgcaggaggaggaggacctgGCTGAGATTGTGCAGCTCGTCGGAAAGGCATCGCTGGCAGAATCAGATAAAATCACCCTGGAAGTGGCCAAACTGATCAAAGACGACTTCCTGCAGCAGAACGGTTACACTGCTTATGACAGGTTCTGTCCGTTCTATAAGACAGTGGGCATTCTCTCCAACATGATCTCTTTCTATGACATGGCACGACATGCTGTAGAGACCACAGCTCAGAGCGACAACAAGATCACCTGGGCCATGATTAAGGAGCACATGGGAGAAATCCTCTACAGGATCAGCTCAATGAAATTCAAGGACCCAATGAAGGACGGCGAGGCGAAGATCAAGGCCGAGTACGCTCAGCTACTGGAGGACATGCAGAACGGCTTCCGTACATTGGAAGAATAGGCTCCCGCCTCTTGTTACCCTTCCGGTTTTCATCTCTGAGCCCTCCACTGCAGAATCACATTCCGCCTCCTCGTATTCCCCAAAAACCTGTGTGCTCCCCtgtgctcctttttttttcttttttttttgtgagtgattgtgcgagtgtgtgtgcgcACTTTCATGTGgagggaaaaagagaaagatgtactgtattcattattttttgttgCCTCATGTCGGCAGACTCTGGATCCTCTGCATGTTCACTGAGTGTGGATTTCATGTGTGTATGAAAGAAGGATCTCTTCGCcccttttcttcctttctctgtttacatgatttgtgtgtgtttagccGTGTTGCTCTTCCTGGAGAGGATTGTTCGGTTGATGTATTGTAATTCATAAACCATCTGTACAGAAGAGTATTGAATATAAATTTAATAAGATCAGTCTATTTATTGACAGCATTTTTGATGTTAAGGCTTTgctgttctttttgtttttatggttgTGTCTCACGCCGTGCAGTGTCGTGCAGTttgctgtgtgaatgtgtaagaGTCGGCAGTCCAGTACTTTGATCATGTTATTCCCAAAGAATTAAacgtggg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan
PF16886	ATP-synt_ab_Xtn	ATPsynthase alpha/beta subunit N-term extension	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000194	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR004100	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR005725	Family	ATPase, V1 complex, subunit A	Interproscan
IPR020003	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR022878	Family	V-type ATP synthase catalytic alpha chain	Interproscan
IPR023366	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR024034	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031686	Domain	ATPsynthase alpha/beta subunit, N-terminal extension	Interproscan
IPR036121	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43607	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033180	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0046034	Biological Process	ATP metabolic process	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-