Gene detail

Detailed information of Csp24G003830.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp24G003830.1	UNCHARACTERIZED	Chr24	8957469	8969294	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp24G003830.1

CACCAATGACATGACAACTCCCTAAAGGTATGTCCTTGGTTGATGAGATACACCTGCTGCAAGGCACACAAGTAGAGACTTTCATTCCCTCAGAGCGTCAGAGCTGTGTGGTGTTTTTTGGattgtatttattcttttactTGATCCCAGAGTTCACAAAGAACAGAAACGCTGGGTCCACTCAATACCGGccCAGCAGCAGAGCAGATGGACCAGGCATCCAACCGGTCAGGAGTGGgcagtgatgtcacagatgaGTCGACATCCGTGGCGGATGTCAGGTGGAGCTCTGACGATGAAGAGAGCTCTGACCCTCAGACTCAGTGTCTTGCACCTCAAACTCCTCTGCCAACCTACAAACAGAAGTTTGATGAATTTAAGAAGTTGTTCAAAGAACTGCCAGACGCAGAGAGACTCCTAGTGGACTACCCGTGTGCCCTCCAGCGGGACATCCTCCTTCAGGGACGCCTCTACCTCTCAGAGAACTGCCTCTGTTTCTACAGCAATGTGTTCTGGGGGACAAAGattaCACTGACTCTTAAAGACGTCACCAATATGACGAGAGAGAAAACTGCTCGGCTGATTCCCAACGCCATCCAGGTCTGCACCAGTACAGAAAAGTTCTTCCTCACTTCCTTCTCGGCAAGAGAGAAAACGTACCAGGGTGTTTTCCGCATGTGGCAAAGGACACTGTTGGACAAGCCTCTGACTGGTTCGGAATGGTTGCAGATGGTTAAACAGCATTATGGGAATGACCTGGGCCTGAGCCATGAAGAGATGGAGAGCTTACACCTATCAGCAGAATCAAGCATGCAAACCAGCCTGATGGCGAGGcctggtggtgatgatggtcaAAGCCCCTCCCTTCGCCTCCCTGGGTTGGAGCCTGGGCCCTTAGAGGCCTCCACGCCTCAAGTGGAAGACTTGCCTTCCCTTGTGGGCTCACAGCAGGATGACTCTCGCAGCACCTCCAGTCAGCAGCGCAGTCCCGCTCCCTCACTGGACCGCCTCGCCCCAGAGCGGTCTTCCAAGCGCTCCACGCTTTCTCTTGACCTCAACGCTAACGAGCACAGCATGTCTGAGCAGAGCGGTTCAGAGAGCATCGAGGATGTAGAGGAGCGAGTGGGCTTGTCCAACGTGCAGGGTCGACTCTATTTGAATAAGGTCTTCCACATCAGCGCTCATAAGATGTTTGAGCTGCTCTTCACCGACTCCACCTTCATCCGCAGGTTCATGAGCGTCAGGAAGATAACCAACGCCAGCTTTGCTGCTTGGCAAAAAGACACTTCGGGGAACATGAAGAGGAGTCTGAACTACACCATAACCATCAGCAACCCTCTGATTGGCAAGTTCTCCACCGCTACAGAGAACCAGACGCTGTACAAAGAATCCAGGGATGGCCAGTATTACCTCGTGGACTCTGAGGTGTACACTCACGACGTTCCCTATCACGATTACTTCTACACACAAAACCGGTACTACATCATAAGTAACTCAAAGCGGAAGTGTCGACTCAGGGTCTATACGGATGTGAAATACAAGAAGCAGCCATGGGGCCTGGTCAAATCCTTTATCACCAAAAACTCCTGGAGTGGCATAGAGGATTATTTCAGACAGCTGGAGACAGAACTGCTGGAGGAAGAAGCGGAGATGAACCGAGGAGGTGGAGACTCCGGGAAGATTAGTGGGCTTCGGAGGAGGCGGCGCACTTATAGCCGGACTCTGTCAGAGCATCTGAAGCCTAGCAAGCAGTACGGGCAAGACCCCGAGCAGCACAGAGACATGGTCCCAATAGAGATAAAAGGCCCACACAGATGGAAGACGACAGCATTAGTGGCTGGGATGAGTTTGATTTTGCTGATCCTGACGTTGATGAATCTGGGTCTGTTCTTCAAGTTGTGGGCCATGGAGGACATAGCCCACCGCATGTACCTGAGCACAAAGCATCGGCTGAGGGAGAGGAGTGAAGCCAGCTTGGGCCCCGATTTTTCTCGACAGGGACCGGGGTATCGGACCAGAGAGGATACGCAGCTGCTAAAAACTGTGCTGCAGGATTCCATCAACCTTTTAGAACAGCTCCGCAGCTCTCTGGTGGTCCTACAGCAGAACTTTGCACTGGCCAATCGCACAGCAGCACCGCAGTGACGCTCCACACCTGGCAACCACAGCCCCCGGCCCTGTGGAGGAAACCGCAGCAGTGAACTGCCTCTGAGGAGATCTGAGACTTTTAGTGACGTTGCCATTGCAGACCTCCCCAGACCCCTGACATGCAAATGTGTTACCTGGGTTTACACGTCCTAAAGCTTGTGGCAGAGCATCAGGTGCCAAGATGTTTTTAAAGCTGTGGACTAACTGCTGCAAGGATGAAGTTAAATGGGAGTCAGCTGCACAGGGAGCCGCAGATTTAGATTTCTGTAAGGGTGCTGCTGACGGTTTCTTTgtcttgcttttcttttttcaccttTTGTCTTAATCATTGTCATTTCTGAGGTGCCTTCTTATACTCCAATGAGCCTCATGCCACACCAGATGAGTTATTGTAAATACttttatctttctttctttctttttttttattccagggAAGAGAATcaatattatttaaaaacaaaatatttcctCTATTTAAAGGTTTGCACACAGGATTTTTTTGCACGAGTGCCTTGTAGATTAGGCAGTGTTTTAGAgatcttttaaattttttttccaataaataattttatgtatatatatataaacattaaatatatgcTACATGGAATTGCAAatagaaaaatctgatttttatattattgtatatgAGCCAAATGTagtgtacctttttttttttttaacaacacattTGATACATTATCTTTTGGCTCCACCCTGGACAGATTGAAGGGATGCATTAATGTACATTAAGTTACCCAGACATTGATGCCCGATTTATTCTCATCACCTGTACATGTGCAATCACAGTTTAATGTTGTATCTTTTTCCTCGTCATTTTCTGCACTGAACAAAGATTTAACAAATCGTTCGATGTAATTTTTCAGCACATATTTTACTCTGTTATTTCAACAAAGGTTTAGGCTCAGTGAGACTGTCAGATTATCTCAGTACTGTGTACTCATACTGTCAACACTAGATGCAAGTTTGTTCTGTGAATTCCAAACTTGCTGTTGTCGTTTTTATCAATCATTGGTGACACACCACTGTAATTGCAGCGAGTCTTGTTTGATGTTTACAGTGTTGTCGTCAGCCTTGTCTGTCTTTTGCAACTGTTTGGTCAATTTGTTTAAAATTGGTTgctgttttgtacatttttaaccCCATTGCAATACACAATTTTAAGAAAAAAGTTGCCAGAATTCTTACTTGTGCTGAGAGATTTTCATTATTGTTTAGTTTACCAGTTATTTTCTTGATCAATGGTTATTTTctgaaaaatgtccatcacagTTTGCCGTAGCAGCTGACCTAGTTTtccatattgtttttgtttgaccaGCCTTTCACTTTACTATCATAGGAAATAACGAAAAGTAgcaaattattataattttaagCGACGTAAGCAGTGAATTTCGGATATTTTTTGTTGCAGATTAATTTTCTGCTTAACTGATTATTGATGAATGTATCTGTTCTGTCACACAGCCATTATCTTCAATGatttcacatacagtacagagaTTGGACCCGTGACAGTACAAACCAAGCTTCACAATGCACTAAGATACACAAAAAGGTCATGAGGATCAACAATGCTTCTACAATTTGGATGCAAAATGACAGAGAAACGGAAGGCTTAAAAACACTTTATGATTTAACATCGGCTATTAAATAGCTGTTTATTTGCTTTGTGAATCAGCTCTTTATACTTTAATTATCTGACTGGACTGAAAGTACTATAATCTTTCTTGAACCAGAGTTACTTATTGTAAATTTTAGATTATGTCAGGAGGAACTGCAAATTGTGTACTGTATGATGCTGGTGGAAACAAGCAGAAAACTAAGTAAAGCTGAATGTCTCATTTCCTTTGTCACCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893	GRAM	GRAM domain	Domain	Interproscan
PF16016	VASt	VAD1 Analog of StAR-related lipid transfer domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004182	Domain	GRAM domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR031968	Domain	VASt domain	Interproscan
IPR051482	Family	Cholesterol transport domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23319	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015485	Molecular Function	cholesterol binding	Interproscan
GO:0032366	Biological Process	intracellular sterol transport	Interproscan
GO:0032934	Molecular Function	sterol binding	Interproscan
GO:0120015	Molecular Function	sterol transfer activity	Interproscan
GO:0120020	Molecular Function	cholesterol transfer activity	Interproscan
GO:0140268	Cellular Component	endoplasmic reticulum-plasma membrane contact site	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-