Gene detail

Detailed information of Csp24G003560.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp24G003560.1	CRYPTOCHROME	Chr24	8560362	8566502	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp24G003560.1

attattttgGCTATTAAGTATCTAAAATCTAAACGAACGCCCAAACTGCATGAAAACCATCTACCGCTTGCATCCCATCTGAACATCTGAGAGATAAGCCCAATGAACCTTGGGTGCATCTTCATAAGAGGCACAACTTTATATAGACACTCACTGGCCACAACAACTCTTGAGGAGTCTATTAGCTTAGTAGCTAAGGGCCTGAAGCTACAAAAGCTTACAAAACCTGAAGTTTTGTAACGTCGTGTGTGGAAACGTGACGGCTGGAGGGGGTGGCGCTGTGGACCGACAGACCGCAGGACGCTGTCCATTCATTCGGAGCCGTGTCGGTGTTTCTGAAACAAATATTGCTGCTAGACTATATTTAAAAGAATGTCTTCCTCCCGTACGATCATATGTTTGCTAAGGAACGACTTGCGTCTCACCGACAACGAGCTTTTCCACTGGGCGCAAAGAAATGCAGAGTACATTGTTCCATTGTACTGCTTTGACCCCAGACATTATGTTGGAACGTACAACTACAACCTACCAAAGACTGGGCCTTTCCGCCTGCGCTTCTTACTGGAGAGTATCAGGGACCTCAGGAACACGTTACTCAACAAGGGCAGcaacCTCGTAGTGAGACGGGGTAAGCCGGAGGAGGTAGTTGCCGAACTCATCAAGCAACTGGGCTCTGTCAGCACTGTGGCCTTTCAAGAAGAGGTAACCTCGGAAGAGCTGGATGTCGAGAGACGAGTGAAGGATGTCTGTGCACAGATGAAGGTCAAAGTTCACACCTGCTGGGGGTCTACACTGTACCACAGAGATGATCTTCCATTTCACCACAtatccagGTTGCCTGATGTCTACACTCAGTTCAGGAAGGCGGTGGAGACCCAGAGCAGAGTGAGGCCTGTGTTTCCAACCCCTGAGCAGCTAAAGCCTCTCCCTCAAGGGCTGGAAGAGGGAGCCATTCCTACTGCAGAGGACCTGCAACAGTCAGAGCCTGTGGCTGATCCTCGCTCAGCCTTCCCCTGCAGTGGTGGTGAAAGTCAGGCTCTGGCTAGACTCAAACATTATTTCTGGGACACTGATGCAGTTGCAACTTACAAGGAGACTCGCAATGGCTTGATTGGTGTGGATTATTCCACTAAATTTGCACCGTGGCTGGCGTTGGGTTGCATTTCACCCAGGTATATTTATCATCAGATCAAGCAGTATGAGAGGGAGcgaacagccaatcagagcactTACTGGGTCATTTTTGAACTTTTGTGGAGGGATTATTTCAAGTTTGTAGGTGTCAAGTATGGAAACAGGCTGTTTCAGGTCGAAGGACTTCAGGACAAATCTGTTCCGTGGAAAAGGGACATGAAGCTTTTTAATGCTTGGAAAGAGGGAAGAACAGGAGTGCCCTTCGTAGATGCCAACATGAGGGAGCTGGCAATGACAGGCTTCATGTCCAACAGGGGGCGGCAAAATGTTGCTAGCTTCCTCACCAAAGACCTGGGTCTGGATTGGAGGATGGGAGCTGAGTGGTTTGAGTACCTTCTGGTTGACTATGACGTCTGCAGCAACTATGGCAACTGGCTGTACAGTGCTGGTATAGGAAATGACCCCAGAGAAAACAGGAAGTTCAACATGATCAAGCAAGGCCTCGACTACGACAGTAATGGGGACTATGTGCGCCGGTGGGTTCCTGAGCTGCAGGGGATCAAGGGAGCTGACGTGCACACGCCTTGGACCCTCAGCACTGCAGCGCTGTCACACGCTCATGTGTCTCTGGGTGAGACCTACCCCACCCCCATAGTCACTGCGGCTGAATGGAGCAGACACTTTAACAAGAAGCCGAGTGGCACAGGGCCTTCACCAAGAGGAAAGAAAGGCCCATCTCACACTCCCAAACAACATCGAGACAGAGGCATAGATTTCTATTTCTCCAGAAGCAAAGACCTCTGATCTGTCTCACGCAAAAGTTGGACATGCAGACGGTTGGTGGAGGGATGGACGGAAGCTCCAGCGATGCAAGCGTTGACTGTAAAAACCTTTGTTGCatattggcatgctgactgagGGAAGTTGATATGAGGAAATGCTTTAAATAGCTCTCATGAAGCGTCTCTCATAGACTCATGTCTATGTTTCCTGTTGAGCTGCATCAATCGTggaatcattttgttttttcttatgtCTGTTTGGATATACAGATGTTTTGTCTTCAAATCAACTTTCAGGATCTGCCTATTTGTGGctgttacaaaataaaacatttaaaggttGTTAAGCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00875	DNA_photolyase	DNA photolyase	Domain	Interproscan
PF03441	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002081	Family	Cryptochrome/DNA photolyase class 1	Interproscan
IPR005101	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR006050	Domain	DNA photolyase, N-terminal	Interproscan
IPR014133	Family	Cryptochrome DASH	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036134	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR036155	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455	CRYPTOCHROME	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000719	Biological Process	photoreactive repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003904	Molecular Function	deoxyribodipyrimidine photo-lyase activity	Interproscan
GO:0003913	Molecular Function	DNA photolyase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-