Gene detail

Detailed information of Csp24G003160.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp24G003160.1	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Chr24	7452703	7457575	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp24G003160.1

AAAACTTAGCGAGACCGTATCCATGTCAGTGGAACAAGGCATGCTGATGTCAGAGATTTTTCCTCTGCCCTCCACAGTGGGAGGATCTCTGTGCGTTGAGTCACGCAGCTGTCAAAGATAGCTGTCACCCAGTTTCAGATCAAACACAGTCAATGAGAAAAGGGCTTTGAGCCGAAGGGACGCAAGAGATCACAGGTAACCCTCCCTCACTATCCAAACAAGGACCAGGAGAAGAacaaatccccccccccaaaaaaggagGGAAAGAATCGAGTTTTGATGATTAAGGATTTTCGAAAATTCGGATACACGCTGGGGATATctggagaaaagaagaaaacactgcACTAACACAAAGGCGATTTTCGTCTGCGCTCGGCGAGGAGAAAAGTGGGCATTTTTTGGACGAAGATGAAGACGAAAAAGGGTTTGATGATGCTGTCAGGGAGTGAGACGGATGACGAAGACAGCGTGGACGCCCCTCTGGATCTGTCGTCCAGCGGGGGGAGCAGTGGGAAGAGGAAGCGGCGGGGGAATCTGCCCAAGGAGTCGGTTCAGATCCTCCGGGATTGGTTGTACGAGCATCGCTACAACGCTTACCCCTCCGAGCAGGAGAAAGCCCTCCTGTCCAAGCAGACTCAGCTCTCCACACTACAGGTGTGTAACTGGTTCATAAATGCACGGCGGCGGCTCCTTCCAGAGATGCTAAGGAAAGACGGCAAAGACCCAAACCAATTCACCATATCCAGGAAAGGCAGCAAGGCCGGCGACAGCTTCTCCGACAGCTCTCAGTCCCCAAAACACAGCAGTCCTGCACCGGGGGCCGAGGAGAGCTACGACAAACGCGTCCTCCACCCCTCCAACTTCGAACCCGCCATGCCCAGCGTCCTGAGGAAGGCGGTGTCTCCCTCCACACCCTCTCCGACCTCCATCTCCCCTTCTCCCGGGCTCATGCCCACTCGTCCTTCTGTCATCTGTCACACCACTGTCACCACGGCAATGCAGACCAGCCCGACAGCCTCCCACCCCTCTGTGCCAGGAATGAACTGTGACAGGGCGACTGAGCTGTTTCAGTCTGCACAGGTGCTGCTCAGGTGCCGGGATGAAGGGCCAGGCAGCCAGCCTgtcccccccaccaccaccaccatcctcAGCAGCACCGGCATTGAGGGCAACCTGAGCCCCCGCAGCGGGCTCTTCAACACCCCTCCCCCCACACCTCCAGACCTCACACAAGACTTCAGTGGCTTCCAGCTCCTGGTGGATGTGGCCCTCAAACGGGCCGCAGAGATGGAGCGCCAAGCCAAACAGCTGGTCTCCTAAAAGGGAGAAagtgacagaagaagaagaggagggaatAAAGACTGACTTTGTGTCTCGACTATGGAACTCATCTAAGAGTTCAGTGACTTGTCTGCACGCAACAGAGAACAAATCCACATGAAAGCCTGATCATTTCTATTTTTGGTATACCAATCAAATTGATGAGGATTGTtttttatggagaaaaaaaaaactgtatcaAGGTGCCTTGGCTGTAAGTTGTTCATTCATTTCACATTCATGCGTTTGTATCTGCATGTGTATCTTATTTGCACACAGGGACCAAAAATGTTATCAGAGAAATGCTGCCTGTCTTATGTCTTTCCATTATACTATATATCATATTAGAGTACAGAGCAAGAGCAAGAATCAGCCTTCCTTCTCAGATCAATCAGACCGATTGGTCGCAACTACACAAGTTTACCGCCGTGCATTTCAGAGATCAGTTTGTGATTGGTCTGCCTTGTTTGTTTGCACATTAAAGGCAGAAGGTCATCTCAGTGTCTTAAACATACTTTGCTCTTGGCATCTATGACAAACTTATTCACTACTGTAGTAATGTTATGCGTTTTTCATGAGTATAAGTATAGTTTTGATTTTGTAATTTACTTTTAgctattttaaaagaaaaaaactctatgcttttttttactctttttttgtttgtttgttgttttttttgttccccACCAAGGGATATTTCAGATGACCAATGTAGCAGGTTCTCAGTCTGAGCCTTCATCCCATCACTCAGCGAAAAAAAACAATGGCCAGTGGACTATAAAATGTAACACTACAGATGTCTTTTCTGCATTTGCTGTCTCGCAAACCTGACAAAGACCGCATTTATGAaatcaccaaaaaaacaaaacattttcatgtataaTAGGACCATGTGTATAGTTAATGTGACATGATGCCCAATGATGTGATTTCATTTCATACTGTGCAATGTTTGTGGCAAATAGGGGTCACATGGGAttcaaataaagttttgtttttctaca

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001227	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-