Gene detail

Detailed information of Csp22G005860.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp22G005860.1	POLYCOMB GROUP PROTEIN	Chr22	19781825	19815065	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp22G005860.1

ATGCAGTCTCACGCTCAGGAGCAGCCGGTGGCTCTCGCTGCGGTGATGTCACACTTCCCGACCAATGGGAAAGAAGAGGAAGTGAACACAGATGCAGATTCCATGGAAGAAGAGGCGGAGTTTAACTGGGAGGAGTACATGGAGGAGACGGGGGCCAACGCTGCCCCTCACACCACCTTCAAACATGTGGAGATCAGCCTGCAGAGCAGCTTCCAGCCCGGCATGAAGCTGGAGGTGGCCAATAAGAACAGCCCGGACACGTACTGGGTGGCCACCATCATCACCACCTGTGGCCAGCTGCTGCTGCTGCGCTTCAGCGGCTACGGCGAGGACCGCAAGGCCGACTTCTGGTGCGATGTCATGACGGCCGACCTGCACCCGGTGGGCTGGTGCACCCAGAACAACAAGACCCTCATGCCCCCTGAAGCTATCAAAGAGAAATACAGCGACTGGACAGAGTTCCTGGTGCAGGACCTGACCGGCTCCAGGACGGCACCGGCCAACCTGCTGGAGGGGCCTCTCAGAGGTAAAAACACCGTGGATCTGATCCTCGAGGGCTCAGTCCTGGAGCTTCAGGACCTCTCGGACCCCTTCCAGTTCTGGCCTGTCCGAGTCATCCAGAACGTGGGAGGGAGGCTCCGCCTGCGCTACGCCGGCCTCTCCGAGGACCACCAGGATCAGGACACCTGGCTGTTCTACTTGGATGTCAGGCTCCGCGCGCTGGGCTGGGCTGTGGAGACCTGCCTCGCCTTAGAACCGCCCACAGCGCTCCGGGCCCTGAGGAGCGCCCCTGACTGGCAGCAGGCTCTGGACGACGCCCGAGTCGACGGACAGAAGACTCCGCTGCCGCTCGAGGTGTTCAAGGACCACGTAGACCTGCCTAAGCACTCCTTCAAGACGGGGATGAAGCTGGAGATGGTTTCTCCGTGGGAGGCGCTCCAGATCTGCCCCGTTTCTGTCACCAAGGTCTACAATGAGATCTACTTCCAGGTAACGCTGGACGATCTCTCGGCTGACGCTACGCCACAGTTTGTGGTGTGTCACGCCAACTCAAACGGCATCCTGCCCGTGCAATGGTGTCTGAAGAACGGCGGCCAGGACTTCGACTGGGCTGACTACCTGAAACACAGCGGGACCGAGGCGGCCCCTGATGCCTGCTTTCCTGATACATGGCAGAACAGAGGCTTTGCCAAGGACATGTGGCTCGAGGCGGTGAACCCTCTCCGGCCCGCGGAGGTGTGTGTGGCTCAGGTCACACAGGTCAGAGGACGCCTGCTGTGGCTCCGACTGGAAGGTGTGGCCAAGCACCTGTCAGAGTGTATCGTGGACGTCGAGTCAGCGGACATCTTCCCTGTCGGCTGGTGTGAGGCTAACGCTTACACTCTGACCCCTCCACTCAAACCTGTCTGCCAGAAGCAGAAGAAGATAGCAGTGGTCCAGCCGGAGAAACAGTTGGCTCCGTCCCAGCCGGTAGAAACGACTCCCATCAACCACTGCCAGCCCCTCGCCACGGATCCAGGCTCAGCCAATGGCAGATACTGCTGCTCCAAGATTTTCGTCAACCACCGCTGTTTCTCAGGGCCTTACCTCAACAAGGGGCGCATCGCCGAGCTGCCGCAGGCCGTCGGGCCCGGGAAATGCACACTGGTCCTCAAAGAGCTGCTGAGCATGCTGATCAACGCCGCCTACAAGCCTGGACGAGTCCTGAAGGAGCTGCAGGAGCTGGAGGATCAGAGCTGGGACTGCCAGGAGGAGACCCTCAAAGCCAAATATAAAGGGAAAACCTATCGCTCCACTATCCGGATCATCCGCCTCGCAGACCAGATCCCAGACTTCTGCCGGAAGGTGTGCGTGAAGCTGCAGTGCTGCCCGAACCTCTTCAGCCCCGCCCTTGTCACCGACAAGTGCCCGGAAAACTGCTCCCTTCAGACCAAAACCAAATACACTTATTACTACGGGAAGAAGAGGAAGCTGTCCAAGCCGACGGGAGGGGAGGAGACGGCGGAGGGTGACCTGGCCAAACCGACGCGCCGCAGGAAGAAGAGGAAAGCCATCTTTGTGCAGAAGAAGAGACGCTCGTCCGCCGTGGACTACACTCCTGCCGGCTCACCGCTGGACAGCGACGAGGGAGAGGAGGATGAGCAGATGGCGCTGCAGTCGGGCAGCGAAGGCACCAGCTCGGAGCCACGCGACGACCAAACCGACACCTCCTCGGTGGAGGTGACCAGCAGCCGACCTCGCCGGGCCGCGACTCTGCGCCGGGCCTTCAGCGTCGGTGTCGCCACGGGAACCCAGGAGGCCCCCGAGTGCCGCCGGAGGTCGACTCGCTCGCTGTCCGCCTACAACCAGAACAACAAGTATCAGGCACCGAAAGGAGAAGACATGCAGGTGCAGACAGGGAAACAACAACACACTGATGGAGGTTCAGCCCTCACAGTGGAGGAGGAAGGTCAGCTGGTTTTGGACAGGAACCCTCTGGAGTGGAGCGTCGACGAAGTCGTTCAGTTCATCAGCTCCACTGATTGTGCGTCTCTGGCCAACATCTTCCAGGAGCAGGACATCGACGGTCAGGCCCTGCTGCTGCTGACTCTGCCCACCGTACAGGAGTGTATGGACCTGAAGCTCGGCCCCGCCATCAAACTGTGTCACCAGATAGAACGAGTCAAGGTTGCCTTTTACAGACAGTACGCCAACTGA

Transcript

Csp22G005860.1

GGGGAGGCGCAGGATGCAGTCTCACGCTCAGGAGCAGCCGGTGGCTCTCGCTGCGGTGATGTCACACTTCCCGACCAATGGGAAAGAAGAGGAAGTGAACACAGaTGCAGATTCCATGGAAGAAGAGGCGGAGTTTAACTGGGAGGAGTACATGGAGGAGACGGGGGCCAACGCTGCCCCTCACACCACCTTCAAACATGTGGAGATCAGCctgcagagcagcttccagccCGGCATGAAGCTGGAGGTGGCCAATAAGAACAGCCCGGACACGTACTGGGTggccaccatcatcaccacctgtggccagctgctgctgctgcgctTCAGCGGCTACGGCGAGGACCGCAAGGCCGACTTCTGGTGCGATGTCATGACGGCCGACCTGCACCCGGTGGGCTGGTGCACCCAGAACAACAAGACCCTCATGCCCCCTGAAGCTATCAAAGAGAAATACAGCGACTGGACAGAGTTCCTGGTGCAGGACCTGACCGGCTCCAGGACGGCACCGGCCAACCTGCTGGAGGGGCCTCTCAGAGGTAAAAACACCGTGGATCTGATCCTCGAGGGCTCAGTCCTGGAGCTTCAGGACCTCTCGGACCCCTTCCAGTTCTGGCCTGTCCGAGTCATCCAGAACGTGGGAGGGAGGCTCCGCCTGCGCTACGCCGGCCTCTCCGAGGACCACCAGGATCAGGACACCTGGCTGTTCTACTTGGATGTCAGGCTCCGCGCGCTGGGCTGGGCTGTGGAGACCTGCCTCGCCTTAGAACCGCCCACAGCGCTCCGGGCCCTGAGGAGCGCCCCTGACTGGCAGCAGGCTCTGGACGACGCCCGAGTCGACGGACAGAAGACTCCGCTGCCGCTCGAGGTGTTCAAGGACCACGTAGACCTGCCTAAGCACTCCTTCAAGACGGGGATGAAGCTGGAGATGGTTTCTCCGTGGGAGGCGCTCCAGATCTGCCCCGTTTCTGTCACCAAGgtCTACAATGAGATCTACTTCCAGGTAACGCTGGACGATCTCTCGGCTGACGCTACGCCACAGTTTGTGGTGTGTCACGCCAACTCAAACGGCATCCTGCCCGTGCAATGGTGTCTGAAGAACGGCGGCCAGGACTTCGACTGGGCTGACTACCTGAAACACAGCGGGACCGAGGCGGCCCCTGATGCCTGCTTTCCTGATACATGGCAGAACAGAGGCTTTGCCAAGGACATGTGGCTCGAGGCGGTGAACCCTCTCCGGCCCGCGGAGGTGTGTGTGGCTCAGGTCACACAGGTCAGAGGACGCCTGCTGTGGCTCCGACTGGAAGGTGTGGCCAAGCACCTGTCAGAGTGTATCGTGGACGTCGAGTCAGCGGACATCTTCCCTGTCGGCTGGTGTGAGGCTAACGCTTACACTCTGACCCCTCCACTCAAACCTGTCTGccagaagcagaagaagatAGCAGTGGTCCAGCCGGAGAAACAGTTGGCTCCGTCCCAGCCGGTAGAAACGACTCCCATCAACCACTGCCAGCCCCTCGCCACGGATCCAGGCTCAGCCAATGGCAGATACTGCTGCTCCAAGATTTTCGTCAACCACCGCTGTTTCTCAGGGCCTTACCTCAACAAGGGGCGCATCGCCGAGCTGCCGCAGGCCGTCGGGCCCGGGAAATGCACACTGGTCCTCAAAGAGCTGCTGAGCATGCTGATCAACGCCGCCTACAAGCCTGGACGAGTCCTGAAGGAGCTGCAGGAGCTGGAGGATCAGAGCTGGGACTGCCAGGAGGAGACCCTCAAAGCCAAATATAAAGGGAAAACCTATCGCTCCACTATCCGGATCATCCGCCTCGCAGACCAGATCCCAGACTTCTGCCGGAAGGTGTGCGTGAAGCTGCAGTGCTGCCCGAACCTCTTCAGCCCCGCCCTTGTCACCGACAAGTGCCCGGAAAACTGCTCCCTTCAGACCAAAACCAAATACACTTATTACTACGGGAAGAAGAGGAAGCTGTCCAAGCCGACGGGAGGGGAGGAGACGGCggagggtgacctggccaaacCGACGCGCCgcaggaagaagaggaaagcCATCTTTGTGCAGAAGAAGAGACGCTCGTCCGCCGTGGACTACACTCCTGCCGGCTCACCGCTGGACAGCGAcgagggagaggaggatgagcaGATGGCGCTGCAGTCGGGCAGCGAAGGCACCAGCTCGGAGCCACGCGACGACCAAACCGAcacctcctcggtggaggtgACCAGCAGCCGACCTCGCCGGGCCGCGACTCTGCGCCGGGCCTTCAGCGTCGGTGTCGCCACGGGAACCCAGGAGGCCCCCGAGTGCCGCCGGAGGTCGACTCGCTCGCTGTCCGCCTACAACCAGAACAACAAGTATCAGGCACCGAAAGGAGAAGACATGCAGGTGCAGACAGggaaacaacaacacactgatGGAGGTTCAGCCCTCACAGTGgaggaggaaggtcAGCTGGTTTTGGACAGGAACCCTCTGGAGTGGAGCGTCGACGAAGTCGTTCAGTTCATCAGCTCCACTGATTGTGCGTCTCTGGCCAACATCTTCCAGGAGCAgGACATCGACGGTCAggccctgctgctgctgactctGCCCACCGTACAGGAGTGTATGGACCTGAAGCTCGGCCCCGCCATCAAACTGTGTCACCAGATAGAACGAGTCAAGGTTGCCTTTTACAGACAGTACGCCAACTGATCCAGCAGCAGCGACGTCACCGACTGAGGAAAGACATGCGGTCGAACGCGACTGGGAAACGGAGGATTTGGTGCCCGCTGCTGGAAAACGTGCGACAGGAAGGgatatttaaaagaaaacaggagaagaagaaaatcatttCGCTGCAAAAATGTGATGCAGTTCAGATAAAAACTGTAAAAGCCATCGGAACGGATCCGTGTGCTTTACTGATCTGTGAAGACGTCATTTTGAGAAGCTGAGgacttttgtgtttatttcctgctttttttccctccattttATTTGTGATAGAGGAGCATTATAGCATTTAAGTTTAAattaattatgaaatatatccCCTTTGTTTGTGTGACATGATTGGTTCTGATAAGATATagttgaaaagaaaatatttaacacatcaaaaaaaaataatatatttggaATATTTATTGTTATCCTAATTTATAAGAGTAATCTGTCTAATCATGAAGTCCttttctattgaaacaaacCCCTAAAAGATGTTTAAGTTATTTCACACACAGAACTcagatttgtatttatttaaatttac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02820	MBT	mbt repeat	Domain	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12140	SLED	SLED domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR004092	Repeat	Mbt repeat	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR021987	Domain	SLED domain	Interproscan
IPR037604	Domain	Scm-like with four MBT domains protein 1/2, SAM domain	Interproscan
IPR038348	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR047353	Repeat	Scm-like with four MBT domains protein 2, first MBT repeat	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-