Gene detail

Detailed information of Csp22G004670.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp22G004670.1	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Chr22	16470866	16485784	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp22G004670.1

ATGGCGGACGGTGTGGATCATATCGACATCTATGCCGACGTAGAGGAGGAATTTAGAGAGGAAGCTGACTACCCGGTCCATGAACAGATCGACCTGTATGACGATGTAATATCCCCATCAGCCAACAATGGAGATGCTCCAGAAGACCGTGACTACCTGGACACGCTACCTGCACCAGGTGGCTCAGAGGGGGGGAAAAGTGCCCCACCCAATGTGGTGTACACGTACACAGGCAAAAGGATTGCCCTGTACATAGGAAACCTCACATGGTGGACGACAGATGAGGACCTGACAGAAGCCATCCGTTCAATAGGCATCTCAGATGTGCTGGAGATAAAGTTCTTTGAAAACAGAGCCAATGGCCAGTCAAAAGGCTTTGCACTTGTGTGTGTGGGCTCTGAGGCGTCATCCAGGAAGTTAATGGAGCTACTGTCAAAAAGGGAGCTCCATGGTCAAAATCCCATCGTCACACCATGCAACAAACAGTCCCTCAGCCAGTTTGAGATGCAGTCACGCAAAAGTACTCAGTCAGGCCAGATGTCTGGGGAAGGTAAAGCTGGCCCACCTGGTGCCGGCCTTCGTGGAGGTTTCCCCATGGGTCGAGGCAGAGGCAGGTTCCCCGGACCACCCGGCCCTGGAGGAGACCGCTTCCCTGGTCCTGTTGGACCTGgaggaccaccaccacactTTCCTGGCTCTGGGATGAGACCAGATCTGATTAGGCACCAAGATGGCCCTCTGATGGATATGAGTTTCAATCCCTTCCCGCCGGGGGGCAGGAACGGGAGCTGGCGTGGCAGAGgtGGGATGCAGGGTCCCCCACGTCCCCCTCCCGGTCCACCAGGCCCCCCTGGTCCTCCAGGACCTCCCCCTCCTGGTCAAGGCCTCCCTCCTCCCCTGGCAGGCCCTCCAAATCGCGGCGACAGGCCTCCTCCCCCTGTTCTTTTCCCTGGTCAGTTCGGCCAGCCTCCGTTGGGACCCCTGCCCCCAGGCCCCCCTCCTCCAGGTTATGGCCCACCCCCTGGCCCCCCACCCCCTCAACAGGGCCCACCACCCCCAGGACCTTTCCCTCCTCGTCCCCCAGGCCCCATTGGGCCTCCCATGGCTTTGGCTCCACCTCCACACATGCCAGGTCCCCCACCAGGTGGACCACCGCCAGCCCCCCATGTCAACCCTGCGTTCTTCGCCCCACCTGGCAACAACAACATGCCCCCCAACGACAGCCGAGGGCCCCCTGGACCAGGCGACCCATACGGACGCCCGCCACCATATGAGAGAGGGGATTACGGTCCTGGAGGCCGGGACATGGAGGCATCCCGGGCGCCTCTGAGCGAGGCGGAGTTTGAGGAGATCATGAACAGGAACAGAGCCATCTCCTCCAGCGCCATATCTAGAGCAGTGTCTGATGCCAGTGCAGGTAAATCTGACACTGACTATGGCAGCGCAATAGAGACCTTGGTGACGGCCATCAGTCTGATTAAACAGTCCAAAGTGTCGGCAGACGACCGCTGTAAGGTCCTAATCAGTTCCCTGCAAGACTGTCTCCACGGCATTGAGTCAAAAAGCTACGGTTCCGCCTCCAGGCGAGAGCGTTCCAGGGAACGAGACCACAGCCGCTCAAGAGAAAAGAGCCGCCGTCACAAGTCCCGCAGTCGCGAACGGCACGAGGACTACTACCGAGAACGCAGTCGGGAGCGTGACCGCCATCGTGAGAGAGACCGGGACCGGGAccgcgagagagagagggagcgggaATACAGACACCGCTAGACTACAATGGAGCTAACGAGGATcaaggatggatggaaggaaaaGGAGGACGAATTTCAGTGCGACACCACTTCCCTACCCTGCTTGACCGGACAGGATCACAACCACCGCCTCTTCCTCaacccctccatctctctcctctcagtcTCCACTCATCCTTCTCCCTGTCTGTTCATCTTATCTGCCTGACTAAGAGCAGTGGATGGAAGACCCTGACCTGTGTAAGGCTATGTTATCTAAACATCTATACTTGTGGTAACTaaagatgaaagaaaaactTTCCAAGCagctcttttatttttacaatgtTTTATTTGACATGATGTGATGATGCTTTTTTGCAAAGACACAATAAAACAGCCCACAAACTCCCCGGCTAGTAGACACGAACATTACATcctctttgttttatatttttcctcattcactGCTGTGTACATTCAGTTTAGAGTTCCGTTTTTATAGGGTGCATATTTGACCTCTCTCCCCACCCCCTCTCATTCTCATACATTCTTTTCATGGTTAGTATGTTTGTAAATGTCTCTGCTTTTGATTAAAACTAGATGgtgttgtaataaaaaaaatgttactcGATGCATTTGGTCAATTCCTCTGTAAGTCTGGCTCATTtatattaaatgtatattttgtaCTGCAGACTTTTTTCATATTGAAATTGTCTAAATTTAGATTAGTTTTCCCTGTGTTTAGCAGCTTTGCAGTAGAAAGTAGAACCCTCTCAATAGCCTCCACTGTGTTCTTGTATTCAGATGGTTAAATCTTTTACGGTAAGACAAATTGGACAAACATACTTTTTTTGTAATGTGCATTGATTGAACTTGAAGGTCTACATGTACACGGAGCTTGTTGGACCCCACAGACCTTAATACCAAAAAGTACGTGGAAATGTTCACAAAGAGGTTTCTGTGTGTATCGTGGACATTATCATGAACCAAATTGTCTGTTTTCTGTTAATGTAAACTAAATAATAGATTCAGTAATCCATGTTAATTCAAGCAACTATTGTAATTAAACTTTCCGTGGATTTGATCATTCTTCAAATGTGAATCCCACTTGTAGGAAATTTGCCACTTAGGTGACATTTTTGCTCCTATTTTCCacagctgttttttgtttttgtttttttggggtctGTTTTATATAAATTACTCTGTAACAACATTGAGAAACAAAGTAACATGCAGTTTGTTAAAATATGGAATGTGCACCATGACACTAATATTGTCATGCAATGCGACATTGTTTTTCTTAATCCACTACTCATGTTCACGTCTTGCATTTATGTTGACATAGACTGATTGTCAACACTGACACAGAACCTGTTTAATAGTCAAGATCTGTTGACAAATGAGCGCTTAGatacatgtatgtttttaacTCCCTGGCCAAAGTAAGTTATATTGGGTCTTAAAATTTTACTGTGGATCATGAGGCCAGACCAAATTATTGAATTTCATTGAATAATAATGGGAAAAAGTTAAATAACATTTATCAGGGAGTGTTATATTGCTGTTTGTTCCATTTGTTCTTTTAGAGAACAAGAGAAAAGTTGTATCAAAAGACAAAATCATTGAAATGCTGATTTTAATAGATAAGCAAAAAATATATGACACACCTGGTATACCTCCCTCTATTGTTTTCATCTAAGAgtcctgtgtttatgtttttgttttttgtcttaagAGATTATTAATATACTTGTCATCATTACGattgttcttttgtttattttaaaagtgCCGTCAAAACCGTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan
IPR034772	Family	CPSF6/7 family	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-