Gene detail

Detailed information of Csp21G008950.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp21G008950.1	CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED	Chr21	18890293	18906255	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp21G008950.1

cgcGGCAGTGGGTCGGAGCCGCTGTGTCCCCGGTCTGGCACGTTCCTAGCCAAATTCTCCACGGTGTAAAATTGGATCCCCCTTTTTCACAAAACTAAAGAAAATCCCCAATTAAATTCCCTGCAACCGCTTATACGTTTCAGCCTAACATACATCTCCAAATCTCCATTAGATATTTGCGAAGATGGCGGTGGTAAGCGGGATGTCGGGGTCGGCTGTAGCCCGGCTTGAGGGCCGAGAATTTGAGTATCTGATGAAGAAAAGGTCGGTCACTATCGGCCGTAACTCATCGCAGGGTTCGGTGGACGTGAGCATGGGACACTCTAGCTTCATCTCCCGGCGACATCTCGAAATTTTCACTGCGGGAGATGATGGCACAGGCACGGGGGAATTCTATCTCCGATGCCTTGGGAAAAACGGGGTGTTTGTTGATGGGGTGTTCCAGAGAAGAGGGGCTCCACCTCTACAGCTTCCACGAATGTGTTGTTTCCGGTTCCCCAGCACCAGTATAAAAATCACGTTCACAGCCCTGTTCAATGACAAGAAGGAGCCAAGGAACGTGCCGGAATCACCGGTCAAGCCCGTCCAGCCCCAAATTTCCCCACTGACCATCAACATTCCTGACAACATCGCCCACCTCATGAGCCCACTGCCTTCACCTACTGGCACCATCAGTGCGGCAAACTCCTGTCCATCAAGTCCGCGGGGGGCGGGACTCTCCAGCTACAGGACAGGCCGTGTTCTGGCCTCTGACCTAATAGGAGACAACTCCCAATCAGAAAATGACAAAGAAGCCTCAGGTGAAGACAGTCCAAAGGACGACTCCAAACCTCCGTACTCATACGCACAACTAATAGTCCAAGCTATCACCATGGCGCCGGATAAACAGCTAACACTGAATGGAATCTACACCCACATCACCAAGAACTACCCCTACTATAGAACAGCTGATAAAGGGTGGCAGaaCTCGATCCGCCACAACCTGTCTTTGAACCGCTACTTCATCAAAGTGGCTCGTTCCCAAGAGGAGCCGGGCAAAGGGTCCTTCTGGAGGATTGACCCTGCTTCTGAGGGCAAGCTGATAGAACAAGCCTTCAGGAAGCGCAGGCCTAGGGGGGTGCCCTGCTTCAGGACCCCTATGGGACCACTCTCCTCCAGGAGTGCTCCAGCTTCTCCCAACCACACAGGGGCACTTTCTGCCCACTCCAGTGGGGTTCAGACCCCAGACAGCCTGTCCAGAGAGGGCTCCCCAGTCCCCTTGGAGCCAGAGCCAACCCCGCCGCCAGCCCCCACCCAAACCACGACAGTCCAGCCCAAACTCGCTGTCATCCAAGAGGCCCGCTTTGCACAGAACTCCCCTGGCTCCCCCCTCAATAACCAGCCAGTATTGATCGCCGTGCAGCGTCAGGTGCCTCAAACGACCATGAAGCCTGTGACCTACGCTATGGCCACGCCAGCCATAGTAACAACGACCGGTAGCTCTGCTCCCGTCATGCAGACCGTGCACGTCGTCCACCAGATCCCAGCCGTCACTATGGCAACTGTGTCCGGACAGCCTGCTGCTGCAGTGAGCTCAGAACCTCAGCAGAACGGAGGTGGAGAGCATCAAGAGATCAAAGTCAAAGTGGAGCCAGTCCCGTCCATCACAGCCTCGTCTATAGGTGGAGTCAGTCGCATCATCCAGACCTCTCAGGCTGCTCCTTTGACAACAGTTACCATCGTGCAACAAGGCCCGCTTGGTCAGCACCAGCTCCCAATAAAGGCCATCACACAAAATGGGACCCATCTGGTCCCCATCGGTACCGCTGCTAGCAcagCCGTTGCAAACCCTCTTCACCTCCTGGCGGCCCACGCCTCAGCCTCGGCGTCCCTCCCTACCAAGAGGCAGAATGGAGAACTGCAAGACCAACCCATAACAAAGAGggtgaaggaggaagaggagggtggagCAGCACCTGCTACCAATAacaccaccaacaacaacaacggcACCACGGACAGAGCCGGAGGAGAAGCGGTCAGTGAGCAGATCGGTGACAAGTAGCCTCCCACCCCGATCTGCATCCTGACCCTTGCTCTCCAGTACGCATTGAGCCTCACCCCTTTCTCACTCTGACCCCTCCATCCCGACTGGTTATCATCTACTCCAAGGTGccaaaaaacaaagagatgcGGAAACACTTGCAGGACTCCTCCTCAGCCCCCCAGTCCTCTTCCATCGATTTAAGACCATGGAATACGATGCAAAAACTAAAGACCAAATTGAAAATGGAGCCAGAGAGTAGCTGATGACTGTGAATCCCTGATGTTTGAGACCCAAATGTCAAGAAGAAGCACAGGAAGAAGAAACGATGTAAAAATCCAGATTTCAGATCAGAAATGACTCATTGGACAgtgaagatggagaggagcctCGTCCTGGTAGCATAACAGAAAAGCACTTAACTGTGTCGGATAGATAATGCAACCAAAATCACCAGTAGTGTATTCCACAAAGGGGAAGTTTGTCTATGTACGTGATGATATTCCCATCTACGGCAGCTAGCCTCCATGTCGACCTACCTAACCCAGTTGTGAGTAGATATACAGTATTCTGTTGTACTCGTGTATCTTTGGATCTTTTTTGAGTGTTTTCCCAAGGCACAGATACTatctagtaataataattaagatAACTAAAAGCTATTAAGTGGGGTCTTTGAGAACATTTAAACATCACAACATGATATTTTGGGAAGCCTTtaatttagttgtttttgtATGTGGACTCTCTGTTCAGTGAAATGAATGTAgtctcctttttttcctttaaagaAAACACTATCTATGGAGTGgatgtctttttttctgctcaTCCATGCAAATTATCCATGCAAATTCTTTATCACTGTACATCCAcagatttttcatattttacaaatatcCTATGAGATAAAAAAGTATATTCCCATGCGTATTTGACCATATGCTTCATCAAGCTTGCATGTTACGGATCTAGAAACAATGTACGTGAGCAGATTATCTGAATATGGAACTGAAGAAAATTTAGACTGAATCTTCACTGTATGATTCTGACCAGTGCTGCACTTAaacttgtttgttgtttttttttcttctcctttttgtatttttatttgctctgtttttcccCCGTCATCATGGGCTGTTTGTTACCTTTGTGTTGAAGTTGGCGGTCTCTTTGCTTGATTATTTTATTCTGCTCAGGCTACTAAACAGTCTATTCTATATTACATGAGGAAAAACAAGTGATAGGTGTTTGTTCTGCTTCAGTGgataaatgcttttttttttttataaatttatttaaaagacaTAACCTCTTAGTTTGTATTCCTTTGAGTAAAGGCCTTCTCTGCTGGGCAAATTCAAAATCTGTCTGCGTGAACAATTTCTTTTTCTCGGGAGTAAAGATGATCTGACTCAAACATTCAGACACCTACTCTTTCACATGCTGAAGGAAAGTTTGATGGAGTTTGTTATTCAGAtcatttctgaagcttcacaGGGAAACGGTGTTGCAGCACTctgctaaacaactgaagatgaTGGggagttgtttttaaaaaaaaaaacactgtaaaatgactccatacagctcatacggTTTAATTCAAAGTCTCCAGAGGATACGATCTTCACTGCACAGCTGGAACACATATACATGTACCGCTAGACGAGATCAACCAGAACTTCCGACCAGCAGTTGTCACTCATAAACCAAAATGTAACGCGAGATCCGACTTGAGCTCTTTGACCCGATTCTTCAAACTGATCTTTTTGCTTCGACTGTTCACATTCCTCCTTGTATCTGACATTGGTGTGAACATATCTGTTTTCTGACGTCATATTTCCAACAAGCACGCTGCTGAACAACACAATGTCTTTGGCACAACAGTCAATCATCAAAATTAATGAGAGGTGCATGTATTCATTCCCTCCACAGTTTGCTGTGGTGACGGTCCGTTGGCTTTTTAGCTGAAGGCATGAGGCTAGAAACAGGATTCGATTGAAGCCTTTtcccatttaaaaaaacaacactcccAGTTGTTGTGATCCTCCATATTTAACTTAGTCCACCATTGTGGACATTTACGCTCATCTTACctggctgaagtgactcaactcgggttttttgccttaatgtggcataaatcagattttttttttc

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Fork_head

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250	Forkhead	Forkhead domain	Domain	Interproscan
PF00498	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001766	Domain	Fork head domain	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR018122	Conserved_site	Fork head domain conserved site1	Interproscan
IPR030456	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR047397	Domain	Forkhead box protein K2, forkhead domain	Interproscan
IPR047398	Domain	Forkhead box protein K2, forkhead associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45881	CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-