Gene detail

Detailed information of Csp21G007440.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp21G007440.1	POLYCOMB GROUP PROTEIN	Chr21	14552604	14562731	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp21G007440.1

ATGGTCCTCCCCCAAGCCGAACACAGGATGCCCTACCATTGTGTGGCCTATGGATGTGGCAAAACTTCAGAAGATGGTGTGACACTGTTTAAATTCCCCAAGGACCACGAGGAGTTTCGCAAATGGGAGAAGCAGGTGCAGCGATCCCGCCCTCAGTGGATCGCCACACCCAATTCTTTCCTCTGCCATGAGCATTTTGGCAAGGAATACTTTGAGCCCAGACCACCCACAGAAACTCTGAGGCTGAGGCCAGGAGCTGTACCCACAGTGTTCGTCCGTCCACACTGTTCCTCCTGTGATGGAGTGGGCTGTAACAAGTGCCTGCCTGCTATCCAACGGCGGGCCTTTGCAGGTGAACCAAGAGAACATGACTTTGATGATATTGATGGAGGAGGTGATGAAGAACTTCCGAAAGAAGGAGAGGTGAACCCGGGAGTAAAAAACAAAGAAGAACGACCAGTGGTATGCGAGATGTGTGGCACCACCGGTAATATGAGCACCTTTTTTTCAAAGACCAAGCGTTTCTGCAGTACATCCTGTTCACGTTCCTATTCATCAAACTCCAAGAAAACCTCAGTACTGGCACGTCTGCAGGGAAAGCCCCCCTCCAAAAAAGCCGTAGTGTTGAACAAGGTGACCAAATCCGTTCCAATCCAAACAGGATTGTATGTCTCTGCTGCAGGTTTTGAGTGGGGAGCCTACCTGGAGAAGGAAACATCTCTGGCGGCGTCAGTGTCCTGCTTCAGACACGTTCCACTATGCACCCAGTGGGATGACATCTCCGTAGGGATGAAGGTGGAGGTCCTGAACACCAATGCAGTGTTGCCCAGTAAAGTCTACTGGATCGCTACAGTCATCCAAGTTGCAGGATACAAAGCCCTGTTGAGATATGAAGGCTTTGAGCACGACAGCAGCCATGACTTCTGGTGCAGCCTTGTTTCGGGAGAGCTCAACCCGATCGGATGGTGCGCCATGACGAGCAAACTTCTGGTGCCACCGCAGGATGTGAAGCAGAACATCCCAGATTGGAAAGAGTATCTGATGACGAAACTGGTCGGGGCCAACACTCTACCTGTTGACTTCTACCTCAAGCTGGCAGAGAGCATGAAGATCCCTTTCAGAGTAGGAATGTATGTGGAGGTAGTGGACCCCAAACACGTGAGTCGGACCCGCTTGGCCATCATAGACATGATTATCGGTGGCCGTCTGCGTCTGGTGTATACAGACCAAAGTGACACCATAGAAAATGTGATCGCTGACTTCTGGTGCCACATGTGGAGTCCCCTCCTGCACCCGATAGGCTGGTCCAGCAGAGTGGGTCACACCATGAAAGCACCTGTAAAAAATTCGGAAGTTGCTGCTTTGAAGGCTAACTCTGACACTTTCCTGTTGTTCAAAAAGCCCAGGTTTGTCTACATGGAGGGAGGTTTCTTTGAGGAAGGAATGAAGCTAGAGGCCATTGACCCTCTTAATCTGGGAAGTATCTGTGTGGCCACTGTACACAAGGTGCTGTTAGATGGGTACCTGATGGTGGGCATCGATGGCACCATATCAGACAACGGCTCTGACTGGTTCTGCTACCATGCCTCATCTCATGCCATCCTTCCTGTTGGCTTCTGTGAAAAGAACAACATTCCTCTCACAGTACCTCAAGGTTATGACACTCAGACCTTCTCTTGGGACAAATACCTGGAGGAGACCAAAGCTCAAGCTGCACCAGCAAGACTGTTCAACACTGACTACCCGGGTTATGGCTTCTCCCCCAACATGAAGCTGGAGGCGGTGGACCTGATGGAGCCGCGTCTAGTGTGTGTGGCCACCGTGAAGCGCTGCGTGGGCCGCCTGCTGCTCATCCACTTTGACGGCTGGGATGATGAGTTCGACCAGTGGATCGACCACCAGTCCCCAGACATCTACCCAGTAGGCTGGTGCGAGCTTAACGGCTACCAGCTCCAGCCTCCGCCAGGACTCGTTGATTTAACTGAAAACCAGCAGGCACACAAGAAATCCAAGCCGTTTTGTTTTGGTAAAAAGAAAAAGAAGTATGCAAAAAAGAGACTTTCTCGGGGTCACCATAAAGATGACTCTGGTCAGCAGCCTGATGTCACAGTTGGTCCTCCAGGGCTGGAAGGCCTCAGTCCTCCTCCAAAAATGCCTCTCATCCAACCCAAGACTGAGCAAGAGGAGCAGGAGATCTTTGCAGTGCAGGTGAAAGTGGAGGAGATGGAGACCTCTATTGATCTTCCAGATAAGCCCCCACAAATCTGCAAGAGTAAAATCAAAGAGGAGGGAGAGGAGCAAAGTGAGTCAGGAGCACGTCGGGCACCAAAGCAGAGCAGCTTGAACAACTCGGCTCAGGGAAAGAGGGAGCAGAGTGAAACTGCCGCAGGAAGTAGTGAAGATTTGGGATCTGTGGAAGAGGGCTTTACTGGTGAAAACAACAAGGAGCAGAGTGAAAACCAAAAAAGCAGCAGTGGAGAGGAGAGAGAAAAGCTGGACCAAGAGGAGGGGAGCAATGGAGAAGGCAGCTCCGTGGAAGAAATTTCAGAGAGCAGTACAGAGCAGGACACGTCCCGGGAGGGTTCTCTCTGA

Transcript

Csp21G007440.1

CTAAAACTTCAATACCCATAATTCCTTGTCCGGGAATTGACTAAGGTGACGTCGAAGAACTTATAGAACAACTCATAAAAGGAAATACATTTGCTGTAGATCCTGCTTTCTACTCTGGATGGTCCTCCCCCAAGCCGAACACAGGATGCCCTACCATTGTGTGGCCTATGGATGTGGCAAAACTTCAGAAGATGGTGTGACACTGTTTAAATTCCCCAAGGACCACGAGGAGTTTCGCAAATGGGAGAAGCAGGTGCAGCGATCCCGCCCTCAGTGGATCGCCACACCCAATTCTTTCCTCTGCCATGAGCATTTTGGCAAGGAATACTTTGAGCCCAGACCACCCACAGAAACTCTGAGGCTGAGGCCAGGAGCTGTACCCACAGTGTTCGTCCGTCCACACTGTTCCTCCTGTGATGGAGTGGGCTGTAACAAGTGCCTGCCTGCTATCCAACGGCGGGCCTTTGCAGGTGAACCAAGAGAACATGACTTTGATGATAttgatggaggaggtgatgaagaacTTCCGAAAGAAGGAGAGGTGAACCCGggagtaaaaaacaaagaagaacgACCAGTGGTATGCGAGATGTGTGGCACCACCGGTAATATGAGCACCTTTTTTTCAAAGACCAAGCGTTTCTGCAGTACATCCTGTTCACGTTCCTATTCATCAAACTCCAAGAAAACCTCAGTACTGGCACGTCTGCAGGGAAAGCCCCCCTCCAAAAAAGCCGTAGTGTTGAACAAGGTGACCAAATCCGTTCCAATCCAAACAGGATTGTATGTCTCTGCTGCAGGTTTTGAGTGGGGAGCCTACCTGGAGAAGGAAACATCTCTGGCGGCGTCAGTGTCCTGCTTCAGACACGTTCCACTATGCACCCAGTGGGATGACATCTCCGTAGGGATGAAGGTGGAGGTCCTGAACACCAATGCAGTGTTGCCCAGTAAAGTCTACTGGATCGCTACAGTCATCCAAGTTGCAGGATACAAAGCCCTGTTGAGATATGAAGGCTTTGAGCACGACAGCAGCCATGACTTCTGGTGCAGCCTTGTTTCGGGAGAGCTCAACCCGATCGGATGGTGCGCCATGACGAGCAAACTTCTGGTGCCACCGCAGGATGTGAAGCAGAACATCCCAGATTGGAAAGAGTATCTGATGACGAAACTGGTCGGGGCCAACACTCTACCTGTTGACTTCTACCTCAAGCTGGCAGAGAGCATGAAGATCCCTTTCAGAGTAGGAATGTATGTGGAGGTAGTGGACCCCAAACACGTGAGTCGGACCCGCTTGGCCATCATAGACATGATTATCGGTGGCCGTCTGCGTCTGGTGTATACAGACCAAAGTGACACCATAGAAAATGTGATCGCTGACTTCTGGTGCCACATGTGGAGTCCCCTCCTGCACCCGATAGGCTGGTCCAGCAGAGTGGGTCACACCATGAAAGCACCTGtaaAAAATTCGGAAGTTGCTGCTTTGAAGGCTAACTCTGACACTTTCCTGTTGTTCAAAAAGCCCAGGTTTGTCTACATGGAGGGAGGTTTCTTTGAGGAAGGAATGAAGCTAGAGGCCATTGACCCTCTTAATCTGGGAAGTATCTGTGTGGCCACTGTACACAAGGTGCTGTTAGATGGGTACCTGATGGTGGGCATCGATGGCACCATATCAGACAACGGCTCTGACTGGTTCTGCTACCATGCCTCATCTCATGCCATCCTTCCTGTTGGCTTCTGTGAAAAGAACAACATTCCTCTCACAGTACCTCAAGGTTATGACACTCAGACCTTCTCTTGGGACAAATACCTGGAGGAGACCAAAGCTCAAGCTGCACCAGCAAGACTGTTCAACACTgaCTACCCGGGTTATGGCTTCTCCCCCAACATGAAGCTGGAGGCGGTGGACCTGATGGAGCCGCGTCTAGTGTGTGTGGCCACCGTGAAGCGCTGCGTGGGCCGCCTGCTGCTCATCCACTTTGACGGCTGGGATGATGAGTTCGACCAGTGGATCGACCACCAGTCCCCAGACATCTACCCAGTAGGCTGGTGCGAGCTTAACGGCTACCAGCTCCAGCCTCCGCCAGGACTCGTTGATTTAACTGAAAACCAGCAGGCACACAAGAAATCCAAGCCGTTTTGTTTTGGTAAAAAGAAAAAGAAGTATGCAAAAAAGAGACTTTCTCGGGGTCACCATAAAGATGACTCTGGTCAGCAGCCTGATGTCACAGTTGGTCCTCCAGGGCTGGAAGGCCTCAGTCCTCCTCCAAAAATGCCTCTCATCCAACCCAAGACTGAgcaagaggagcaggagaTCTTTGCAGTGCAGGTGAaagtggaggagatggagaCCTCTATTGATCTTCCAGATAAGCCCCCACAAATCTGCAAGAGTAAAAtcaaagaggagggagaggagcaaAGTGAGTCAGGAGCACGTCGGGCACCAAAGCAGAGCAGCTTGAACAACTCGGCTCAGGGAAAGAGGGAGCAGAGTGAAACTGCCGCAGGAAGTAGTGAAGATTTGGGATCTGTGGAAGAGGGCTTTACTGGTGAAAACAACAAGGAGCAGAgtgaaaaccaaaaaagcagcagtggagaggagagagaaaagctgGACCAAGAGGAGGGGAGCAATGGAGAAGGCAGCTCCGTGGAAGAAATTTCAGAGAGCAGTACAGAGCAGGACACGTCCCGGGAGGGTTCTCTCTGAGGCGTCAAACAAGTAAATATGACTCATTCTGGGTTCAGTTGGCAGATAAGTATTTgttaatgttgtattttttgtcctctttcatgttaagatgttttcttttgtgtaaatattaaatcattaaaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02820	MBT	mbt repeat	Domain	Interproscan
PF05485	THAP	THAP domain	Domain	Interproscan
PF21319	zf-FCS_1	Zinc finger, FCS-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004092	Repeat	Mbt repeat	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR012313	Domain	Zinc finger, FCS-type	Interproscan
IPR038441	Homologous_superfamily	THAP-type zinc finger superfamily	Interproscan
IPR038603	Homologous_superfamily	FCS-type zinc finger superfamily	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-