Gene detail

Detailed information of Csp21G004320.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp21G004320.1	BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2	Chr21	8782704	8840501	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp21G004320.1

CCGGTGTGGGCGCAGCGGAGGGCTTTCCTATAAAACCAGGGATCCCACGGTCGGACGAGCTCGTCTCTCAGCCACCACAGACGGGAGCCGCGATCCGCAAAGCCGGGCAAGCTGTGTCATTTCTCCAATCACAGATCGGAAAATCCTCTCAACCTCACCCAAAGGGAATCTTAGTCTATGGTTCTGACTGACGCGCCTACAAGGATGTCCCGGACCGACGAAGTGCACCGTATAACGGAGAATGTCTACAAGTCCATTATGGAGCAGTTCAACCCCTGCCTGCGGAACTTCATAGCAATGGGAAAAAGCTACGAGAAGGCTCTCACCAGTGTCACATATGCTGCAAAGGGCTACTTCGACGCTCTGGTGCGGATGGGCGAGATGGCCAGCGAAAGTCAAGGCTCTAAGGATCTTGGGGAGGTGCTCTTTCAGATGGCTGAGGTACACaggcagatccagatccagctTGAAGAGATGCTGAAGTCCTTCCACAACGAGCTGCTCACAGAACTGGAAAAGAAGGTCGAGTTGGACGCACGCTACCTGAATGCTGCGCTAAAGAAGTACCAGATGGAGCACAAGAGCAAAGGGGAGAGTTTGGAGAAGTGCCAGGCAGAGCTGAAGAAACTGCGGAGGAAGAGCCAGGGCAGCAAGCACCCCTCCAAATATGGAGACAAAGAGATgcagTATGTTGAAGCGATCAGCAATAAGCAAGGCGAGCTGGACAGCTACATCGCTGAGGGCTACAAGAACGCTCTgtctgaggagaggaggaggtactgCTTCCTGGTGGACCGTCAGTGTGCCGTAGCAAAGAACAGCAGTGCCTACCACAACAAGGGGAAGGAGCTTTtgtcacagaagatcccagtgTGGCAGCAGGCCTGTGCCGAGCCCAACAAACTGCCAGATCGTGCCATGTTCCTTGCCCAGCAGATGAGCGGTGCAGCGGGCATCATGGCTCCCGGTGCTCATCATCCAGGCATGCCCATCTCTGAACCCATCCCTGGTGCTAAACCCCTGCCGGTGCCTCCAGAACTGGCAGCCTTGAGGGCCAGTGGGGGCAtgggacatcagAGGCTGATGGGAGGTGTGGATGGAGGTATGACGGTCATGAACGGCGAGGCCGGTGCTCACGGCGGAGAAGACTACCAGCAGTGGATGGAGGGCAAAGTGGCTCAGGGCAAGGCCTCGTCACAGACCCAGCGTCAAGGAGGGGAGGTCTACTCCAACACCCTGCCTGTACGCAAGGTTGCCCCAGCCAAGAGCAAGACAACACTGACGGAGACCCGTACGCTGCCCCGGTCCAGCTCCATGGCAGCAGGGCTGGAGAGAAACGGGAGAACTCGAGTCCAGGCCATCTTCTCCCATGCAGCCGGTGACAACAGCACCCTGCTCAGCTTCTCTGAGAACGATGTCATAACTCTGCTGGTCCCCGAGGCTCGGGATGGGTGGCACTACGGAGAGAATGAGAAGACAAGGATGCGTGGCTGGTTTCCTTTCTCCTACACCCGAGTGATATCTGATGGCGACGGCAACTCCATGAAACAACTTCGAGTACACaaCCTCCATGGGAAAAGCAGTAGCACAGGCAACCTTCTAGAGAGAGAAGACATGGCTCTCTCTGTCCCTGATTACGGCATCCACTCCCGCATGGCGGCACAGAGCGCTGCTGCCCTGCACGGCAGACAGCAACGCCCCTACAGCGTGGCAGTGCCTGGTTTCTCACAGCAAGGAATTGAAGACTATGAGCCCCGCTTCCCTACAAGTTCCACAGAGGGCAAATTGATTTCGACAGtgtgaggacagacagacaaacagactcaGCCAGACGATGTGATAGGACAGGCACCTTGCAGCCTCTCAACCGACCCCTTCCCTCATCCTTCCCCCACTCCTTCTCCCTGCCTCCCTACCTCCCCCTCACAACAATAAACTGTCCCTGAGCTGATCAATGCAAGGAAAAGACTTGGGTCTGTATCTCCTCTGATCTCCCTCCTTAAACCTGCCCTGTGCTGTCAAACTGGCTGGTAGCCACAGCTGGCCACTGGTTAAGCCACACAATGCCAAACCAGAACAAAACAATCCATCTATCCGATTTTGAAAATCAATGAAATGGACATTTTCTCTGAGGAAAATGTATCTTTTGCTTGTCTTTCATGCAtgtacatttctttttaaatgtatcgCTGGGGATTTCTCTCCCCACCAAAGGAAAACCTGATTTGATCACAAATGTCGGTGCTCTCCATCTCGATGACGATGTAAAGGATGTGTAAAATCAGGGCGTGAAATGAACGATGTTGATCCCAAAGAGGATTTTCATAATGTAAGCAAAGCATTGCAATCAATACTTTTACTGGTTCTTTCAGTATTCAGCACTAATTTGACCTTTTTCATGCTGTTAGGTTTTGTATTCCTCTGAGATGAGAGGTCATGTGTCACGAAGTGTGAGCtgcaaatgtaaatgttttaactTTATGGAATGGAGACAATGTGACAGGAATGTTTGATGTACATATATGTGCCATACTGAAGTGCTTGTCAGACAGTATCTATGAtcaagtcattaaaaaaaaaatgcaccttaTGAAAGTAATGTAGTCTATTTCTGTCAACAAACGTACTCAGACTGGATGGAGGGACACTGTGCTCAGACTCGTAAAGCCAGGAGCCCGGGGTCCTTTGTCTGTTATGGTGTGTGAATATCATGCCAAGGCTGAATGGGGTCAACCATTCCTCATCCCAGAAGCACATGCAAGGAtctgtgtttggttttttttagcTGAAACTGCTGTTCAGTGGATTAATGTTGATTATTTAACCAAACAAAACTGACAAACATCCACTGCTTCTAGCTAATGTGAGAATCTGCGGCTTTTTCGTTCCATGCAGTGTTCATGCAAAGTATTTGGAACATGCTTAATTTTAACTGGTATGTTTTCCAGGTTggggaaaatgtgttattttgaaAATACCCCCTTGATAAATGATGTTTTCCTCTGCACAATCGCTCATGTTAACCAAAAATCTTTTGATATTTGAAATGAGACGATCCTGTCGTCATACTTGTTTGTTGTCCTCTGGCGTCAAAATGAGTGAGTGTTAAATAATTATGATCCAGTCATACAATCAAAGTTAACATGAACAGCTGACAATGTGGGTGTGAAAGAACTCTGACCATGGTCATATCAATGTAGATAGAAAAATCAAATCTTTACAAAATGAATAATAGTTGCAGCTCTAGGTCGGTCAACCCTGGTTCATGCATGAAAGAAAAGACAACTGGTACTGCTGTTTGGCTCGCTGCACATGATCTCCAAACATTGATTTTCCTTTTTCAATGTTTCATCATATTATAGTGCCTCATACTGCAATCAAGTGATTAATgtgaataatatatttttattctaaCGTTAAGGAATCAAATTGATGTTACTAAGAGACATGCTGATGAACCTCTGGAACCAGAGGTTCAAATGTGGCATCGGCAGTATTATGATGATGACACAGGGTCATGGGTTTCAAAGTGGTGTCTACACTGTGCcgcatatatctatatatctttaTCCTTGAAAGGCAGAGGAGTTGATTTAGTGTTGAAACCTCATTCAGCCTTCTTGTACTGTTGTATTTGCAATTAAAGGCTTGATTTGAAAACCTCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08397	IMD	IRSp53/MIM homology domain	Family	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR013606	Domain	IMD/I-BAR domain	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR027681	Family	I-BAR domain containing protein IRSp53/IRTKS/Pinkbar	Interproscan
IPR030128	Domain	I-BAR domain containing protein IRSp53, Inverse-Bin/Amphiphysin/Rvs domain	Interproscan
IPR035594	Domain	IRSp53, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14206	BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007009	Biological Process	plasma membrane organization	Interproscan
GO:0008093	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0030838	Biological Process	positive regulation of actin filament polymerization	Interproscan
GO:0032956	Biological Process	regulation of actin cytoskeleton organization	Interproscan
GO:0051017	Biological Process	actin filament bundle assembly	Interproscan
GO:0051764	Biological Process	actin crosslink formation	Interproscan
GO:2000251	Biological Process	obsolete positive regulation of actin cytoskeleton reorganization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-