Gene detail

Detailed information of Csp21G000740.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp21G000740.1	PSEUDOURIDYLATE SYNTHASE	Chr21	1333463	1339427	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp21G000740.1

ATGTCAGAGGCTGTGATCCAGCGGATAAAGGATCTGGAGGCAGAGCTGGAGAGGCTCAAGTCCCAGCTGAAGGACAGGAGTGAAGCTGGACATGGCATGGAGCTGTTATCCCATCCGTCTCCTAACACAGACTGTAAACCTGATGGGATCATCACCACCACCACCAGCAGCAGCAGTAAAAAGGGCAAGAAAGCAGGCAAAGAGCGTGTATTTGACTTCTCTGCACACCCTCGGCGCCATGTGGCTCTGCGGCTGGCTTACCTGGGATGGGCCTACCAGGGGTTTGCAGTCCAGGAGAACACAGACAACACCGTGGAGGCCAGACTATTTGAAGCTCTGCTAAAGACACGGCTGATCCAGGACCGACAGAGCTCCAACTACCACCGCTGTGGTCGCACTGATAAAGGAGTCAGCGCTTTCTCTCAGGTCATAACCATAGATTTGCGCTCCACACAGTTTTGTGGCGGTCTGGGCGTCACGCTACCTGAAAATGTTGATGCTAGTAACAAGAATAAAGCAGATATCTCTGAGCTTCCATATGTGAAGATGATGAACAGAGTCCTGCCCCTGGACATCAGGATCCTGGACTGGGCACCGGTAGCAGAGGGCTTCAGCGCACGATTTGACTGTCAGTCTCGAACGTACCGCTACTACTTCCCCCGAGGATCCCTGGATGTGGCGCTGATGGCAGACGCTGCAAAGAGATATGAGGGCACTCATGACTTCCGGAACCTGTGCAAAATGGACGTGGGCAACGGAGTCCTGCAGTTTGAGAGGACCATCCTGTCGGCATCCGTCCAGCCTGTGCAACCTCAGCACACCTCCAGCACAGACCTCTTCATGTTTGAGGTCAAAGGACTGGCCTTCCTTTACCACCAGGTACGATGCATGATGGCACTGCTTCTCCTGATAGGACAGAAACTGGAAGCCCCAGAGATAATTAATCATCTCCTGGATGTTCAGAGTAACCCCAGGAAGCCTCAGTACAGCATGGCGGTCGACTATCCGCTGGTGCTTCACGACTGTCACTTTGAAGGTCTGAGCTGGAAACAGGAGAATGAAGAGGTGACCCACATCCTGTCTGTGCTGCAGCAGCACTGGACCCAGACTGCGGTCAAGACTCACGTCCTCCATGGGATGATTCAGGGTTTGGAGGCCAAAGGTGGAGTGACCTCCAACCATTGCTGCCTAGTAGAAGGCACCAGGCAGAGAAACTACCGGCCCTTGTTGGAGCGTCCGTGCTGCGAGAGCCTGGAGTCCAGAATAAACCATTTTGTCAAAAGAGGGCGGCTGGAGTGGGAGGAAGGGGAGAACGGGGGTGAGATGGTCCACAGAGGGAAAAGGTCCAAACATTCCCAGAGTTCCTCCAGTCTGCCCGTTTCTGCAGAGACGCCGTCGTCCAAACAAATATCACACGTTCACGAGATGTTCCTGGTGGGGCTGACTGGAGGCATCTCCTCAGGGAAAAGCACAGTGTCTTCAATGCTGCGGGAGCTTGGCTGCCCCGTTATTGATGCCGATGTTGTAGCCAGGAAAGTCGTGGAGCCTCAGACTCCGGCCTACTCCCGCATCGTCCACCACTTCGGACCAGAGATCCTGCTGGAGAACGGCGAGATCGACCGGCAGAAGCTGGGTCAGCTCATCTTCGTCAACGAGGAGAAGAGGAAGCTGCTGAACTCCATCACCCACCCAGAGATCCATAAAGCGATGCTCAAAGAGATCCTGCTCTACTTCCTCAGAGGGTACCGCTACGTGGTTCTGGATGTTCCCCTCCTCTTTGAAACCAGACGCCTCACTCAGTTCCTGAACCACACCGTAGTCGTTTACTGTGACCCTGCCACTCAGCTGTCCCGCCTGATGCAGAGGGACGGCCTGACTCAGGAGCAGGCCGAGCAGCGAGTGGCCGCGCAGATGCCGCTCAACGAGAAGCGCGGCTTAGCCAATCACGTCATCGAGAACTCGGGCAGCCGCGAGGAGACCCACCGGCAGGTCCTGCGGTTGCACACGAAGCTGGAGGACTCCATGGACTTCCTCTTAGTGAGGGTCATCGCCATCGCTGCCTCTGCTGGTCTGGGTGGGATCCTGCTGTACGCAGCCAAGATCCTTTTATCCTAA

Transcript

Csp21G000740.1

ATGTCAGAGGCTGTGATCCAGCGGATAAAGGATCTGGAGGCAGAGCTGGAGAGGCTCAAGTCCCAGCTGAAGGACAGGAGTGAAGCTGGACATGGCATGGAGCTGTTATCCCATCCGTCTCCTAACACAGACTGTAAACCTGATGggatcatcaccaccaccaccagcagcagcagtaaaaaGGGCAAGAAAGCAGGCAAAGAGCGTGTATTTGACTTCTCTGCACACCCTCGGCGCCATGTGGCTCTGCGGCTGGCTTACCTGGGATGGGCCTACCAGGGGTTTGCAGTCCAGGAGAACACAGACAACACCGTGGAGGCCAGACTATTTGAAGCTCTGCTAAAGACACGGCTGATCCAGGACCGACAGAGCTCCAACTACCACCGCTGTGGTCGCACTGATAAAGGAGTCAGCGCTTTCTCTCAGgTCATAACCATAGATTTGCGCTCCACACAGTTTTGTGGCGGTCTGGGCGTCACGCTACCTGAAAATGTTGATGCTAGTAACAAGAATAAAGCAGATATCTCTGAGCTTCCATATGTGAAGATGATGAACAGAGTCCTGCCCCTGGACATCAGGATCCTGGACTGGGCACCGGTAGCAGAGGGCTTCAGCGCACGATTTGACTGTCAGTCTCGAACGTACCGCTACTACTTCCCCCGAGGATCCCTGGATGTGGCGCTGATGGCAGACGCTGCAAAGAGATATGAGGGCACTCATGACTTCCGGAACCTGTGCAAAATGGACGTGGGCAACGGAGTCCTGCAGTTTGAGAGGACCATCCTGTCGGCATCCGTCCAGCCTGTGCAACCTCAGCACACCTCCAGCACAGACCTCTTCATGTTTGAGGTCAAAGGACTGGCCTTCCTTTACCACCAGGTACGATGCATGATGGCACTGCTTCTCCTGATAGGACAGAAACTGGAAGCCCCAGAGATAATTAATCATCTCCTGGATGTTCAGAGTAACCCCAGGAAGCCTCAGTACAGCATGGCGGTCGACTATCCGCTGGTGCTTCACGACTGTCACTTTGAAGGTCTGAGCTGGAAACAGGAGAATGAAGAGGTGACCCACAtcctgtctgtgctgcagcagcactGGACCCAGACTGCGGTCAAGACTCACGTCCTCCATGGGATGATTCAGGGTTTGGAGGCCAAAGGTGGAGTGACCTCCAACCATTGCTGCCTAGTAGAAGGCACCAGGCAGAGAAACTACCGGCCCTTGTTGGAGCGTCCGTGCTGCGAGAGCCTGGAGTCCAGAATAAACCATTTTGTCAAAAGAGGGCGGCTGgagtgggaggaaggggagaaCGGGGGTGAGATGGTCCACAGAGGGAAAAGGTCCAAACATTCCCAGAGTTCCTCCAGTCTGCCCGTTTCTGCAGAGACGCCGTCGTCCAAACAAATATCACACGTTCACGAGATGTTCCTGGTGGGGCTGACTGGAGGCATCTCCTCAGGGAAAAGCACAGTGTCTTCAATGCTGCGGGAGCTTGGCTGCCCCGTTATTGATGCCGATGTTGTAGCCAGGAAAGTCGTGGAGCCTCAGACTCCGGCCTACTCCCGCATCGTCCACCACTTCGGACCAGAGATCCTGCTGGAGAACGGCGAGATCGACCGGCAGAAGCTGGGTCAGCTCATCTTCGTCAACgaggagaagaggaagctgCTGAACTCCATCACCCACCCAGAGATCCATAAAGCGATGCTCAAAGAGATCCTGCTCTACTTCCTCAGAGGGTACCGCTACGTGGTTCTGGATGTTCCCCTCCTCTTTGAAACCAGACGCCTCACTCAGTTCCTGAACCACACCGTAGTCGTTTACTGTGACCCTGCCACTCAGCTGTCCCGCCTGATGCAGAGGGACGGCCTGACTCAGGAGCAGGCCGAGCAGCGAGTGGCCGCGCAGATGCCGCTCAACGAGAAGCGCGGCTTAGCCAATCACGTCATCGAGAACTCGGGCAGCCGCGAGGAGACCCACCGGCAGGTCCTGCGGTTGCACACGAAGCTGGAGGACTCCATGGACTTCCTCTTAGTGAGGGTCATCGCCATCGCTGCCTCTGCTGGTCTGGGTGGGATCCTGCTGTACGCAGCCAAGATCCTTTTATCCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01121	CoaE	Dephospho-CoA kinase	Domain	Interproscan
PF01416	PseudoU_synth_1	tRNA pseudouridine synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001406	Family	Pseudouridine synthase I, TruA	Interproscan
IPR001977	Family	Dephospho-CoA kinase	Interproscan
IPR020094	Homologous_superfamily	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	Interproscan
IPR020095	Homologous_superfamily	Pseudouridine synthase I, TruA, C-terminal	Interproscan
IPR020097	Domain	Pseudouridine synthase I, TruA, alpha/beta domain	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041707	Family	Pseudouridine synthase Pus3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11142	PSEUDOURIDYLATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004140	Molecular Function	dephospho-CoA kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0015937	Biological Process	coenzyme A biosynthetic process	Interproscan
GO:0031119	Biological Process	tRNA pseudouridine synthesis	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-