| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Csp20G007670.1 | CHONDROLECTIN VARIANT CHODLFDELTAE. | Chr20 | 18198385 | 18200177 | + |
| CDS | |||||
| Csp20G007670.1 | |||||
| Transcript |
| Csp20G007670.1 |
| Protein |
| Csp20G007670.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00059 | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF07645 | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF09064 | Tme5_EGF_like | Thrombomodulin like fifth domain, EGF-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000152 | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR001304 | Domain | C-type lectin-like | Interproscan |
| IPR001881 | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR009030 | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR015149 | Domain | Thrombomodulin-like, EGF-like | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR018097 | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR049883 | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| IPR051505 | Family | C-type lectin domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14789 | CHONDROLECTIN VARIANT CHODLFDELTAE. | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0004888 | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0009897 | Cellular Component | external side of plasma membrane | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0016477 | Biological Process | cell migration | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| GO:0050840 | Molecular Function | extracellular matrix binding | Interproscan |
| GO:1990430 | Molecular Function | extracellular matrix protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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